Fluviibacter phosphoraccumulans: SHINM1_011560
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Entry
SHINM1_011560 CDS
T07031
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03410
Base excision repair
fpho03430
Mismatch repair
fpho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHINM1_011560 (recJ)
03430 Mismatch repair
SHINM1_011560 (recJ)
03440 Homologous recombination
SHINM1_011560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_011560 (recJ)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SHINM1_011560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SHINM1_011560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHINM1_011560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
PIGA
Motif
Other DBs
NCBI-ProteinID:
BCA65554
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All DBs
Position
1187516..1189222
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AA seq
568 aa
AA seq
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MVTLSQRAWSERTAWQLEQGGVSPFLARLYAARGINRADQVSTRMEDLLPPTALKGMETA
SSLLADAIIQNRKVCIVADYDADGATACAVAVKGLRLLGIQPDKLDYFVPDRFKLGYGLT
PAIVDLVAQAPGGKPDLLITVDNGIASIDGVAHAKAMGMTVVITDHHLPGATLPAADAIV
NPNQPGCDFASKNLAGVGVMLYVLMGLRQVLRQRHWPAAEQANLGTLLDLVALGTIADVV
SLDRNNRILVANGLNRIRQRRCCPAILALYAVAGKQPDRAQASDLGFLLGPRLNAAGRMD
DMRIGIRCLLAEDMGEALKLAQELDRLNVARRSVEDQMKTDAAKILTQLDVKNTAGISLY
DPNWHGGVVGILAGRIKEQMHRPTIVFASDGTGLIKGSGRSIAGLHLRDALDHLTKIYPD
LIIKFGGHAMAAGLSIRETDFNLFQRAFDELVDQLLPLEARTHSLAIDGPLVDSELCLNT
AKQLADGIWGQGFPAPIFANRFQILESRLLQDKHLKLMLGCGQSRMDAIRFNDTTIPTAQ
DTLAYALEINHYNGVERPQLRIEAICPN
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgctgagccaacgcgcctggtcggaacggaccgcctggcaattggaacaaggc
ggtgtcagcccatttctggccagactgtatgccgcccgtgggatcaaccgagctgatcag
gtcagcacacgcatggaagatctgctccccccgacagcgctcaaagggatggaaactgct
tcgagcttgctggcagacgccattatccaaaaccgtaaagtctgcattgtcgcggactat
gatgcggatggcgccacggcctgtgccgttgcggtgaaaggcctgcgtctgctgggcata
caaccggacaagctggattactttgtaccggatcgtttcaaactgggttacgggctcacc
cccgccattgttgatctggtagcgcaggccccaggtggcaaaccagacctgcttatcact
gtcgataacggcatcgccagtattgatggcgtggcgcatgccaaagcgatgggcatgacc
gttgtgattaccgaccaccatttaccgggcgccacactccccgcagcagatgctatcgtc
aacccgaaccaacccggctgtgactttgcttccaaaaacctagccggtgttggggtgatg
ctttatgtgctgatggggcttaggcaggtgttgcggcagcgtcattggcccgccgccgaa
caggccaatctgggtaccctactcgatctggtggcgctgggcaccattgctgacgtggtc
tccctggaccgtaacaaccgcattctggtggctaatggccttaaccgtattcgtcaacgt
cgctgctgcccggccatattggcgctttatgccgtagcaggtaagcagccggatcgggca
caagccagtgatcttggttttttactgggcccacgcctgaacgctgcgggccggatggac
gatatgcgcattggcatccgctgcctactggcagaagatatgggcgaggcgctcaagctg
gcacaggaactcgatcgcctgaatgtggcgcgtcgttcagtagaagaccagatgaaaacc
gatgccgccaaaattctgacgcaactcgatgtgaaaaacacggcaggtatcagcctttac
gaccccaactggcatggtggtgtcgtcggcatcctcgcgggtcgcatcaaagaacagatg
catcgccccaccatcgtttttgccagtgacggcacgggtttgatcaaaggctccgggcgt
tcgatcgctgggttgcatttacgtgatgcactggatcatctgaccaaaatctacccggac
ctcattatcaaatttggtgggcacgccatggcggccggtctgagcatccgcgaaacagac
ttcaacctttttcaacgcgcttttgatgaactggttgatcaactcctgccccttgaagcg
cgcactcatagcctggccattgatggacccctggttgatagtgaactctgtctgaatacc
gccaaacaattggctgatggcatttggggccagggcttccctgcgccgatttttgcgaac
cggtttcagattctcgaatcccgtctgctgcaggacaaacacctgaaactgatgctgggc
tgcgggcaaagccgcatggatgccatccgttttaacgacacgaccattcccacggcacag
gacacgctggcctatgcgctggagattaatcactacaacggggtcgagcggccgcagtta
cggattgaagccatctgccccaattga
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