Fluviibacter phosphoraccumulans: SHINM1_016030
Help
Entry
SHINM1_016030 CDS
T07031
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHINM1_016030 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpho03019
]
SHINM1_016030 (rhlE)
Enzymes [BR:
fpho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHINM1_016030 (rhlE)
Messenger RNA biogenesis [BR:
fpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHINM1_016030 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCA66001
LinkDB
All DBs
Position
1630929..1632449
Genome browser
AA seq
506 aa
AA seq
DB search
MTELIADDTPPTPTFAELGLDPAIVRAITDTGYTTPTPIQAAAIPAVMGGRDLKACAQTG
TGKTAAFSLPLLQRLLPHANASTSPAKHPVRALILTPTRELAIQVYDNLKEYGKYLPYRI
ACVYGGTDIKPQIAELKLGVEFLVATPGRFLDLVEQKAVNLQSVQALVLDEADRMLDMGF
IPDIQRILNLLPKTRQGLLFSATFSTEIQRLADTMLQNPEYIEVAKRNSVSDTITHQVHP
VAESRKMALLVNLLRTGTMNQALVFVRTKQGCSRLARALQHAGIKTDAIHGDKSQSERMK
ALSAFKAGEMQALVATDVAARGIDIEELPYVVNYELPHTPEDYVHRIGRTGRAGNLGNAL
SLVSADETGYLADIEKLINKPITQIVVPGFEPEEDWCYPPSGKKRDRSALNSNRSTERSP
RGERSDRNERSERRPERSDRPHQDRTRSHYTPKPSTVAADGFDFNKPYESTASTPSNAND
TKPAAPSRRPGRMVAALLGGIKKTQP
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgactgaactgattgcggacgataccccgccgaccccgacttttgccgaactgggtctt
gatcctgccattgtgcgggcaattaccgacacgggttacaccaccccgacccccatccag
gccgccgccattcccgctgtgatgggtggccgcgacctcaaggcttgcgcacagacaggc
actggcaaaacagccgccttcagcctgcctttgctccagagattgctgccccatgccaat
gccagcacctctccggctaaacacccggtacgcgcactgatcctgacgccgacccgcgaa
ctcgcgattcaggtctatgacaacctgaaggaatacggcaaatatctgccctaccgcatt
gcctgcgtgtatggcggtacggacattaagccccagattgctgaactgaagctgggcgtg
gaatttctggtcgcaacaccgggtcgctttctggatctggtcgaacaaaaagccgttaat
ctacaatcggtgcaagccttggtattagacgaggcagatcgcatgctggacatgggtttt
attcccgacatccagcgcattttgaatctgctgcctaaaacgcgtcagggtctgctgttt
tcagccacgttctcaaccgaaatccagcggctggccgataccatgctgcaaaaccccgaa
tacatcgaagtcgccaagcgcaacagcgtctccgacaccattacccaccaagtgcacccg
gtggctgagtctcgaaaaatggcgctgctggtcaatctgttacgcaccggcaccatgaac
caggcgctggtctttgtgcgcaccaaacaaggctgtagccgtctggcccgcgccctgcaa
cacgcgggcattaaaacggatgctattcacggtgacaaatcgcaatcagaacgcatgaag
gccttgagcgcattcaaagcaggagagatgcaggcactcgttgcaacggatgtggccgcg
cgcggcatcgacattgaagagctgccctacgtcgttaattacgaattgccgcacaccccg
gaagactacgttcaccggattggccgtacgggccgtgctggcaacttgggcaatgccttg
tcactggttagcgccgacgaaaccggctacctggccgatatcgaaaagctgatcaacaag
cccatcacccagattgtggtgccgggttttgaacctgaagaggactggtgctatcccccc
tccggcaaaaaacgggatcgcagcgcgctgaattctaatcgaagcacagagcgcagtcct
cgcggcgagcgtagtgaccgcaacgaacgttcagaacgacgaccggaacgctccgaccga
ccgcatcaggaccgtacgcgcagtcattacacgcccaagccttcaaccgttgctgctgat
gggtttgacttcaacaaaccctatgagtcaacggctagcaccccgagcaacgcgaacgat
accaaaccagccgccccttcgcgccggccaggtcgcatggtggccgcgctactgggcggc
attaaaaaaacccaaccctaa
DBGET
integrated database retrieval system
