Fluviibacter phosphoraccumulans: SHINM1_017470
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Entry
SHINM1_017470 CDS
T07031
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fpho
Fluviibacter phosphoraccumulans
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpho03019
]
SHINM1_017470 (hrpA)
Enzymes [BR:
fpho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SHINM1_017470 (hrpA)
Messenger RNA biogenesis [BR:
fpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHINM1_017470 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
FtsK_SpoIIIE
nSTAND3
NACHT
T2SSE
AAA_25
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BCA66145
LinkDB
All DBs
Position
complement(1771383..1775399)
Genome browser
AA seq
1338 aa
AA seq
DB search
MRGSAAAKISPKIAAQIAAREARLADMAGKIRFPEDLPVSGRKEEIAAAISANPVVIVCG
ETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAARSVARRIAEELDTRIGEGVGVKIRF
QDRTAPDSLIKLMTDGILLAESQHDPLLKAYDTIIIDEAHERSLNIDFLLGYLKRVLAKR
TDLKVIITSATIDAERFSKHFTMNGKPAPVIEVSGRLYPVEVRWRPIEDPRDTVAKGEAL
AKPGVRAERSERSAREEREADEDRLYETISDAVDELSRSGSGDVLVFLPGEREIRDAAEV
LRKRHPPHTEILPLYSRLSAEEQDRVFRGHSGRRVVLATNVAETSLTVPGIRYVVDAGLA
RVKRYSYRSKVEQLQIEKISRAAARQRAGRCGRVADGICIRLYDELDFESRSEFTDPEIL
RSSLASVILRMLDLKLGDVTQFPFIEPPPDKAIRDGLLLLEELGAVGVSTQGHQQLTPIG
RDLARLPLDPRLGRMVLAARDNHCLSELMVIASALGAQDPRLRPPEQQQAADEAHRRIMF
GPEEQSEFTAWLKLWAWYDEAMKHNSSRKLTQFCQKHFLSILRLREWRDIHGQLHTLAGE
LGWKFNATPATYEQIHRALLTGLLGNIGCKSEEKGDYLGARGIRFVVHPGSYLQKKAGKW
LVAAELAETSRLFARCVARVNPEWIEQIGEHLIRRSYSEPHWEKKAMQVVAFERTTLHGL
TLQAKRRVHYGALDVAASREIFIREGLVAGEIDQSWVNRWPFYKHNQKLIEDIEELEHKQ
RRQDVLVDDALIEAFYDARIPADVVNGAGFDAWRRDAEKANPKLLYLNRDDLMRHEAGGV
TTDNFPPEILMNGVRYDLSYHFAPGASDDGVTLTLPLAHLNRIPPEACEWLVPGLLRDKV
LQLLKNLPQRYRSKLVPLPTFADEFIAAQQLVRDRAGDQSPSGLMAALIQHILFERGLNA
RGWTLTPDAFAPESLPAHLQMNFRLVDGQGRQHDQSRSLSDLRARWAQEARDAFSQSAQA
AVKAVAHKTEVATSDAPIDADAPAQTSGITSWSFGQLPELMELTVDGQTLYGYPALHDDG
DAVSIRLFDAQDAAANVHRQGLLRLFAIALQEPFKGFEKQLRKDSELGMRYMPLGDAADL
AQQMLWCALEQACLPEQEKNWPRNAEDFVEAARRGRERLGLLIQELSRLVRGILDEWSAV
RKKLLTAKAWPTAVSDIEAHLARLITPTFVRDMARDQLQHVPRYLKAHTVRLERLKSGGA
PALARDQSALAEWTALWQSYERRARDLARAGVQDERLNQFRWQLEELRVSLFAQELKTPL
PVSVKRLEKAWQQLGHAS
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgagaggttcagctgctgccaaaattagccccaagatcgccgcccagattgctgcccga
gaggcgcgactggccgacatggcggggaagatccgttttccagaagacttaccggttagt
ggccgcaaagaagagattgccgcggccatttcagccaacccggtggtgattgtctgtggc
gaaacgggttcaggtaaaacaacccagttgcccaagatctgtctggagctggggcgtggg
gttcatggcctgattggccatacacagccgcgccgactggccgcgcgctcagtggcgcgg
cgtattgctgaagagctggatactcggattggcgaaggcgtcggtgtcaaaatccgcttc
caggaccgcacggcaccggattcgctgatcaagctaatgacggatgggattctgctggcc
gagtcgcagcatgacccgctactcaaagcctacgacacaatcatcatcgatgaggcccat
gaacgcagcctgaatatcgattttctgctcggctacctgaaacgcgtgctggccaagcgc
acggatttgaaagtcattattacctcggccacgattgatgccgaacgcttttcaaagcac
ttcaccatgaatggcaagccggcaccggtgattgaagtctccggtcggctttatccggtg
gaagtgcgctggcggcctatagaagacccgcgagacactgttgccaaaggtgaggctttg
gccaagccgggcgtaagagctgagcgtagtgaacgcagtgcgcgtgaagaacgcgaagcc
gatgaagaccggctctatgagacgatcagtgatgccgtcgatgagctctcccggagtggt
tctggcgatgtgctggttttcctgccgggtgaacgggagatccgcgatgccgcagaagtg
ttgcgcaagcgccatccaccgcatacggaaattctgcctttgtattcgcgcctatcggcc
gaggagcaggatcgggtgttccgggggcatagtggccgccgtgtggtgctggccaccaat
gtggcggagacgtcactcaccgtgccgggcatccgctatgtggtggatgcggggcttgct
cgcgttaaacgctattcctatcgcagcaaggtcgagcagctgcagatcgaaaagatttct
cgcgcagcagcgcgccaacgtgccggtcgttgtggccgggtggctgacgggatctgtatt
cgtctttacgatgagctggatttcgaatcgcggagcgagttcaccgatccggagattttg
cgttcgtcgttggccagcgttattctgcggatgttggatctgaagctaggcgatgtgacg
cagtttccgtttatcgaaccgccgcccgataaggcgattcgagatggactgttactcctc
gaagagctgggcgcggttggggtttctacgcaaggccatcagcaattaacaccaataggc
cgggacctggcgcgcttgccgctggacccgcgtctgggccgcatggtgctggccgcacgg
gataaccattgccttagcgagttgatggttatcgccagtgcgctgggggcgcaggatccg
cgacttcgtccacccgaacagcaacaggcggctgatgaagcgcatcgccgcattatgttc
gggccggaagaacaatccgaatttacagcctggctcaagctgtgggcctggtacgacgag
gcgatgaagcacaactcatcgcgcaaattaacgcagttctgtcagaagcattttctgtcc
attcttcgcctacgtgagtggcgcgatatccatgggcagttacatacgctggccggagag
ctgggctggaagttcaacgccacgcctgcgacctatgaacagatacaccgcgcactgtta
accgggttgctcggcaatatcggctgcaagtcggaggagaagggtgattatctcggtgca
cgtggcatccgctttgtggtgcatcccggctcctacctgcagaagaaggctggcaaatgg
cttgttgccgccgaattagctgagacctcgcgcttatttgcacggtgtgtggcgcgtgtg
aatcccgagtggattgaacagatcggcgagcacttgatccggcgtagttatagcgagccg
cattgggaaaagaaggccatgcaggtagtggcctttgaacggaccaccttgcatggttta
acgctgcaagccaagcgccgggtgcattacggcgcactggatgtggcggcatcacgcgag
atttttattcgcgaagggctggtcgccggagagattgatcagtcctgggtgaatcgctgg
ccgttctacaaacacaatcagaagctgattgaagacatcgaggagttagagcataaacaa
cggcgccaggatgtgctggtggatgatgcattgatcgaagccttctacgatgcacgtatt
ccggcagacgtcgttaatggcgcaggctttgatgcctggcgtcgtgacgcagaaaaagcc
aacccgaagctgttgtatctgaatcgggatgacctgatgcggcacgaagccggcggcgtc
actaccgataattttccgccggaaattttgatgaacggcgtgcgttacgatttgtcgtac
cactttgcgccgggcgcgagcgatgatggtgtcacactgacgttgccgctggcgcacctg
aatcgtattccgccagaagcctgtgagtggctggtgcctgggctattgcgcgacaaggtc
ttgcagttgctgaagaatctgccgcaacgttatcgcagcaagctggtgccgctaccgacc
tttgccgatgaatttattgctgcacagcagttggtacgagaccgggccggggatcagagt
ccgtctggtttaatggcggcactgatccagcacattctgtttgaacgtgggctgaacgcc
cgtggctggaccttaacaccggatgcctttgcccccgagtcgttgcctgcgcatttgcag
atgaacttcagattggtggatgggcaagggcgtcagcacgatcagtcgcgcagcctaagt
gatttacgtgcgcgttgggcgcaggaagcgcgcgatgccttcagccagtcggcacaggcg
gccgtaaaagcggtggcacataagacagaggttgcgacatcggatgcacctattgatgcc
gacgcgcctgcacagacttcaggcatcaccagctggagttttggccagctgcctgaattg
atggagctgacggtcgatggtcagacgctctatggttacccggcattgcacgacgatggc
gatgccgtatcgatacggctattcgatgcgcaggatgcggccgccaacgtgcatcgtcag
ggcttgctgcgattgtttgcgattgccttgcaagagcctttcaagggttttgaaaagcag
ctgcgcaaggatagtgaactgggtatgcgttatatgccgctcggtgatgccgccgatctg
gcgcagcaaatgttgtggtgcgcgctggaacaggcctgcctgcccgagcaggaaaagaat
tggccacgtaacgcggaggattttgtcgaagcagcgcgccgggggcgcgaacgtctgggg
ctgctgattcaggaactatcccgtctggttcgcgggattttggatgagtggtcggctgtc
cgtaaaaaactgctcactgcaaaagcctggcccacagctgtgagtgatattgaagcgcat
ctggcgcgtttgattacaccgacctttgtccgggatatggcccgtgatcagctgcagcat
gtgccgcgttacctgaaggcacacacggtgcgcctcgagcggctgaagagcggtggtgcg
cctgccctggcgcgggatcaatcggcgctcgctgaatggacggcgttgtggcagtcttac
gaacgacgggcgcgtgatctggcgcgtgccggtgtgcaggacgagcgattgaatcaattt
cgctggcaactcgaggagttacgggttagcctgttcgctcaagaattgaaaacaccgttg
ccggtatcggtgaaacgcttggaaaaggcctggcaacagctaggccatgcatcgtag
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