Fluviibacter phosphoraccumulans: SHINM1_019060
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Entry
SHINM1_019060 CDS
T07031
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpho
Fluviibacter phosphoraccumulans
Pathway
fpho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHINM1_019060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpho03021
]
SHINM1_019060 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpho03400
]
SHINM1_019060 (rpoC)
Enzymes [BR:
fpho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHINM1_019060 (rpoC)
Transcription machinery [BR:
fpho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHINM1_019060 (rpoC)
DNA repair and recombination proteins [BR:
fpho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHINM1_019060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Baculo_ME53
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BCA66304
LinkDB
All DBs
Position
complement(1920506..1924744)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVGPEEEFDAITIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMAHIELASPVAHIWFLKSL
PSRLGMVLDMSLRDIERVLYFEAFVVVHPGMTPLSRGQIMTEDDYNAKVEEFGDEFDAMM
GAEGIREMLRTLDLDREVERLRSELATTGSEAKSKKLTKRLKILEAFQRSGIKPEWMILE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEGMGLSTTIKQAKKMVENEEPIVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGQPIIVPSQDIVLGLYYATRERINAKGEGMMFADVAEVERALALK
ELDLHARITVRINEWQPKESGDGWVEATNRYSTTAGRALLSLILPKGLPFKAIDKALKKK
EISKLIDESFRRCGLKETVVFADKLMQNGFKLATRAGISFASCDMQVPAEKADILNAARD
EIKEIESQYTNGLVTGGERYNKVVDIWGRAGDQVAKVMMDRLGKEDVVDAEGNTVKQESF
NSIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPIYSNFREGLNVLEYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVIIEDDCGTENGFVVRALIEGGEVIEPLRDRI
LGRVTAADVIHPETQETMIETGTMLDEDLCDLIEQAGVDEVKVRTPLTCATRYGLCAQCY
GRDLGRGSMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASQVENKSAGVVR
FSALMRYVTNARGEKIVITRSGEVLITTELGQERERHKVPYGATLMVSDGDNIKAGTKLA
TWDPHTRPIITEYAGTVRFEHVEEGQTVAKQLDDVTGLATLVVIDPKRGGKAQNKGLRPQ
VKLLDASGNEVRIAGSEHPVAIAFQVGSIISVTDGQQVGVGDVLARMPQESAKTRDITGG
LPRVAELFEARTPKDTGMLAEVTGTVSFGKDTKGKQRLVLTDLEGNDHEFLILKDKHVLV
HDGQVVNKGELIVDGEPDPQDILRLKGVEELARYITDEVQDVYRLQGVKINDKHIEVIVR
QMLRRVQITDSADSTYIKGEQVERSEVLITNDALRAEGKREAEYEPVLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHAARRGKSAAAAF
DDAFEAPVEDVAVEEIVVAASPADAGEADTAN
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattactggatctgtttaagcaggtaggaccggaagaagaatttgatgcgatc
accatcgggctggcatcgcctgagaagattcgttcgtggtcttttggcgaagtcaaaaaa
cctgaaaccatcaactaccgcacgttcaagcctgagcgtgatggtctgttctgcgccaaa
atctttggcccggttaaagactacgaatgcctgtgcggcaaatacaagcgcctcaagcat
cgtggcgttatttgtgaaaagtgcggcgtcgaagtcacgttggccaaagtgcgtcgcgag
cgcatggcgcacattgaactggccagcccagttgctcacatctggttcctgaagtcgctg
ccgtcgcgtctgggtatggtgctggatatgtcgctgcgcgacatcgagcgcgtgctctac
tttgaagcctttgtcgtggtgcaccccggcatgacgccgctgtcgcgtggtcagatcatg
accgaagacgactacaacgctaaagtagaagaatttggtgacgaattcgacgccatgatg
ggcgccgaaggtattcgtgaaatgttgcgtacgctggatctggaccgcgaagttgagcgc
ctgcgttcagagctggccacgacgggttcggaagccaagagcaagaagctgaccaagcgt
ctgaagattcttgaggccttccaacgttcgggcatcaagccagaatggatgatcctcgaa
gtgctgcccgtgctgccgccagatctgcgtccgctggtaccgctggacggtggtcgtttc
gctacctcggacctgaacgatctatatcgtcgcgtcattaaccgtaacaatcgactcaag
cgtctgctcgagctgcgcgcgccggacatcatcgttcgcaatgaaaagcgcatgctgcaa
gaagccgtggattcgctgctcgacaatggtcgtcgcggcaaggccatgactggtgccaac
aagcgtccgctcaagtcgctggctgacatgattaagggtaagggcggtcgtttccgtcag
aacctgctcggtaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcaa
ctcaagctacatcagtgtggtctgcccaagctgatggcgctggaactgttcaaaccgttc
atcttcaatcgccttgagggtatgggtctgtcgaccaccatcaagcaagccaagaagatg
gttgaaaacgaagagccaatcgtctgggatatcctcgaagaagtcattcgcgaacacccg
gtcatgctgaaccgtgcgccaacgctgcaccgtctcggcatccaggcctttgagccaatt
ctgatcgaaggtaaagccattcagctgcacccactcgtttgtgcggccttcaacgccgac
ttcgatggtgaccagatggctgtgcacgtgccgctgtcgctggaagcgcagatggaagcc
cgtacgctgatgctggcctcgaacaacgtgctgtcgcctgccaacggccagccgatcatt
gtgccgtcacaggatatcgttctgggtctgtactacgccacgcgtgagcgtatcaacgcc
aagggcgaaggcatgatgtttgccgacgtggctgaagttgagcgcgcactggcgttgaag
gaactggatctgcacgcacgcatcactgtgcggatcaacgagtggcaaccgaaggaatcg
ggtgatggctgggttgaagccaccaaccgttattcgacgacggccggccgcgccctgctg
tcactgattctgccgaagggtctgcccttcaaggcgatcgacaaggcactgaagaaaaaa
gaaatctccaagctgatcgatgaatccttccgccgttgtggtctgaaggaaaccgttgtt
tttgccgacaagctgatgcaaaacggcttcaagctggcaacgcgtgccggtatctcgttc
gcctcctgcgatatgcaagtgccggccgagaaagctgacatcctgaatgctgcgcgcgac
gagatcaaagaaatcgaatcgcagtacaccaacggtctggttaccggcggtgagcgctac
aacaaggtcgtggatatctggggccgtgcgggtgaccaggtggccaaggtcatgatggat
cgcctgggtaaagaagacgttgtcgatgccgaaggcaatacggtgaagcaagagtcgttc
aactccatttacatgatggccgactccggcgcccgtggttcggccgctcagattaagcag
ctggctggtatgcgcggcctgatggccaagccggatggttcgattatcgaaacgccgatt
tactccaacttccgcgaaggcctgaacgtgctcgagtactttatctcgacgcacggtgcc
cgtaagggtctggccgatacggcactgaagaccgccaactcgggttacctgacccgtcgt
ctggtcgacgtgacgcaggatctggtcatcatcgaagatgattgcggtaccgaaaacggt
ttcgtggtgcgtgcactgatcgaaggcggtgaagtcatcgagccgctgcgcgatcgtatc
ctcggccgtgtcacggctgcggatgtgatccacccggaaacgcaggaaaccatgatcgaa
accggcacgatgctggacgaagatctgtgtgacctgattgaacaggccggcgtcgatgag
gtcaaagtccgcacgccgctgacttgtgctacccgttacgggctgtgcgcccagtgctac
ggccgcgacctgggtcgtggttcgatggttaatgccggcgaagcggtcggtgtcattgcc
gcgcagtcgattggtgaaccgggtacccagctcaccatgcgtacgttccacgtgggtggt
gcagcatcgcgtgcggctgcagcctcgcaagtagaaaacaagagcgccggtgtggtgcgt
ttctcggccctcatgcgctacgtgaccaacgcccgtggcgagaagatcgtcattacgcgt
tcgggtgaagtgctcattacgaccgaactgggtcaggagcgcgagcgtcacaaagtgcct
tacggtgcaaccctgatggtctccgatggcgacaacatcaaggccggtaccaaactggcc
acctgggatccgcacacccgtccgatcatcaccgagtacgccggtacggtccgcttcgag
cacgttgaagaaggtcagaccgttgccaaacagctggatgatgtcacaggcctggcaacc
ctggtcgtgatcgatccgaaacgtggcggtaaggcgcagaacaagggtctgcgtccgcag
gtcaaactgctcgacgccagcggtaacgaagtccgtatcgccggttcagagcacccagtg
gccatcgccttccaggtcggctcgattatcagcgtgaccgacggtcagcaagtgggcgtg
ggtgatgtgctggcccgtatgccacaagaatctgccaagacccgtgatattaccggtggt
ctgccgcgcgttgccgagctgttcgaagcccgtacgccgaaagacaccggtatgctggcc
gaagtgaccggtaccgtttcgtttggtaaggacaccaagggtaagcagcgtctggtgctg
acggatcttgagggcaacgaccacgagttcctgattctgaaagacaagcacgtgctggtg
cacgatggtcaggtcgtcaacaagggcgaactgattgtcgacggcgaaccggatccgcag
gacattctgcgtctgaagggcgttgaagaactggcccgttacatcaccgacgaagtgcag
gacgtttaccgtctgcaaggcgttaagattaacgacaagcacatcgaagtgatcgttcgt
cagatgctgcgccgtgtccagattaccgattcggctgactcgacctatatcaagggcgag
caggtcgagcgttcggaagtgctgatcaccaacgacgccctgcgcgccgaaggtaagcgt
gaagccgagtacgaaccagtgctgctgggtattaccaaggcatcgctgtcgaccgattcg
ttcatctcggccgcgtccttccaggaaaccacccgcgttctgaccgaagccgccatcatg
ggcaagcgcgacgatctgcgtggtctcaaggaaaacgtcattgtgggtcgcctcatcccg
gctggtacgggtctggcataccacgcggcacgtcgaggcaagtcggcggcagcagccttc
gacgacgctttcgaagcgccggtcgaggatgtggcagtggaagaaattgtggtggcagct
tctccagcggatgctggcgaggccgacaccgccaactga
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integrated database retrieval system
