Francisella philomiragia O#319-029: BF30_1823
Help
Entry
BF30_1823 CDS
T03617
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpi
Francisella philomiragia O#319-029
Pathway
fpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF30_1823 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpi03400
]
BF30_1823 (mfd)
Enzymes [BR:
fpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF30_1823 (mfd)
DNA repair and recombination proteins [BR:
fpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BF30_1823 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AJI46922
LinkDB
All DBs
Position
complement(1846972..1850391)
Genome browser
AA seq
1139 aa
AA seq
DB search
MLNNQISAKDTIVSNAYGSSFSILFNEYLKQNCDFNLIVAEDSQQAHRVYDELKYLNKDS
KIEVFYFPNLEILPYDRFSAAIDIISRRQEILHKLTQNPKNTLVITSISNTLRKLPPAKF
IKEHSFILKTGDSLDITKQKVLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPVGSKVAFRI
DLFDDEVDTIKELDTETQRSGKEIKSINIMPSHELIYNSQNTSFALGKLKILCGEQSQNS
TIATYIKNNEYFSGIEFYLPLFYPELVSLFDYLPKSANIHLIDNISNSIEAFSEEVKYRY
NELKHDIDRPVLPYQELFYSQKEVKDLYEKHQHIKWFQQPKSKSKTLNIDHLEKISANYK
LANPFRDLQKLIDSSNFDKVIFSTDSNGRGEILLEHLNKLQLNIRIAKSFDDALKTKDKF
CLIISPFQEGVIIDKKIILITESDLFPEHIQNSSKISEHDHHPTVDLKDLTDLKPGMHVV
HIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSITEKIALNK
LGSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPD
QLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ
HYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLISSKIDFNNLG
LLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL
SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVDTIQKKKEILQELFPRLRIAIAHGQ
MSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG
RSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGFTLANHDLEIRGAGEILGQEQS
GNIDGIGLNLYMDLLDKTIANLKAGKELNIEDVINSTVCEVELNIPTLIPDYYISDVNTR
LNIYKRISKADHKELVNIKIELIDRFGRLPVEVLYLLKVAHIKIDAINLGIGQIKMFATS
GKINFANTTKFEPQKLIKLIQAQPADFRITKEQDLLITKSTKTAEQRIEFIENFLKNIT
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaatcaaatatctgcaaaagatactattgtgtctaatgcttatggttcttct
tttagcattttgtttaacgaatatcttaaacaaaattgcgactttaatctaatagttgct
gaagactctcaacaagcgcatagagtttatgatgaattaaagtatctaaataaagactca
aaaatagaagtattctattttcctaacttagaaatactaccttatgatagattttctgca
gcaatagacattatctcaagaagacaagaaatattgcataaacttacacaaaatcctaaa
aatactctagtaataacaagtatttcaaatacattaagaaaacttccacctgccaagttt
atcaaagaacatagtttcatacttaagacaggcgatagcttagatataactaaacaaaaa
gtattactaaccgaagctggatatactttagtaaacaatgtttttgaaaaaggtgaattt
agtattcgtggtagtattattgatattttcccagttggatcaaaagtagcttttagaatt
gatcttttcgatgatgaagttgatacaatcaaagagttagatacagaaactcaacgctct
ggcaaagaaataaaatctataaatattatgccttcacatgagctgatttataattcacaa
aatacttcttttgcattaggaaaactcaaaatactatgtggcgaacaatcgcaaaattca
actattgcaacgtatataaaaaataatgaatactttagtggtatagaattctatttacca
ttattttatcctgaacttgttagtctatttgactacttaccaaagtctgcaaatatccac
cttattgacaatattagcaactcaattgaagcattctcagaagaggttaaatatagatat
aacgagttaaagcatgatattgatagacctgttttaccctatcaagaacttttttattca
caaaaagaagtcaaagatctgtatgaaaaacatcaacatatcaaatggttccaacaacca
aaatctaagtctaaaactctaaatatagatcatctagaaaaaatctcagcaaactataaa
ttagctaatccttttagggatttacaaaaattaatagatagctctaattttgataaagtt
atattttcaactgattcgaatggacgtggtgagatacttttagaacatttgaataagtta
cagttaaatataagaattgcaaaaagttttgacgatgctcttaaaaccaaagataaattt
tgcttaattatctcaccttttcaagaaggtgtaataattgataagaaaatcatattaatt
actgaatcagatctttttcctgaacatattcaaaactcttctaaaatatcagaacatgat
catcaccctactgttgaccttaaagatctgacagatctaaaacccggaatgcatgtagtc
catattgatcatggtattggcagatacgaaggcttagaaagtattgaattaaatggtaaa
aaagatgagtttatacttctaagatatgcaaatgatgcaaaaatttatgtgccaatcact
tcattaaatctaatttctatttataactcttctattactgaaaaaatagcattaaataaa
cttggttcagataaatggaaaaagcaaaaagaaaagactatcaaaaagattatcgatgtt
gctgcaaatctcttagaaatatatgcaaaaagagaaatgcgacaaggattcagcaattct
ttagatgaagaagaatatctacgattctgtgcagattttccatatgaagagactcctgat
caactcttagcgataaatgatgtcttcaaagacatgatatctgctaagccaatggacaga
cttatttgtggtgatgttggttttggaaaaacagaaattgcgatgcgagcagcatttcta
gcaactcagaatcaaaagcaagtagctattctagtacctacaactattttagctcaacaa
cactataatagttttaaagacaggtttgctaatactgctgtaaatatagaggttataact
cgttcaaaaacagcaaaagcacaagaagagctttttgataacctcaaaaaaggtacagtt
gatataataattggtacacataagcttatatcctcaaaaattgactttaataacttggga
ttattaattattgatgaggagcatcgctttggtgtcgcgcaaaaagaaaaattaaaagcc
ctgaaagctgaaatagatattctaacaatgtcagcaactcctattccacgtagtttaagt
atggcattttcagcacttcgtgacttatcaattattgcatctccccctgctaaacgttta
tctgtaaaaacatttgttaaggaatatgataataacataattcgtgaagctgtaagtcgt
gaaaccattcgtggtggacaaattttctatctttataataaagtcgatactattcaaaag
aaaaaagaaattcttcaagaattattccctcgtttgagaatagctattgctcatggtcag
atgagtgaaaaagaaattcaaaagataatgtttgactttaagcataataaatatcatata
ttactttgtaccacaattattgaaacaggtatcgatattccaaatgctaataccttaatt
atcgaagatgctaataatctaggtctagctcaattacatcaactaagaggcagagttgga
cgttcacaccatcaagcttacgcatatatgctagttcctagtgaaggtagtattacaaaa
gatgctacaaaaaggttagaggctattggtagcactgattcacttggaggtggcttcaca
ctcgcaaatcatgatttagaaattcgtggagctggagagattcttggacaagaacaaagt
ggtaatattgatggtataggtctaaatctatatatggatctcttagataaaacgattgct
aatcttaaagctgggaaggagctgaatattgaagatgtcattaactcaactgtttgtgaa
gttgaacttaatattccaacactaattcctgattactatattagtgatgtaaatactagg
ttaaacatttataaacgaatttcaaaagccgatcataaagaattagtaaatataaaaatt
gaacttattgatcgttttggtaggctacctgttgaagtgttatatcttttaaaagtcgct
cacataaaaattgatgctataaatttaggtattggacaaataaaaatgtttgccacatct
ggtaagattaattttgctaacactactaaatttgagcctcaaaaactaataaagctaatt
caggctcaacccgctgattttagaatcacgaaagaacaagatctactcatcacaaaaagc
actaaaaccgctgaacaaagaatagagtttatagagaattttttgaagaatataacctaa
DBGET
integrated database retrieval system
