Francisella philomiragia GA01-2801: LA02_1688
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Entry
LA02_1688 CDS
T03621
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpj
Francisella philomiragia GA01-2801
Pathway
fpj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LA02_1688 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpj03400
]
LA02_1688 (mfd)
Enzymes [BR:
fpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA02_1688 (mfd)
DNA repair and recombination proteins [BR:
fpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LA02_1688 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AJI57553
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All DBs
Position
1641416..1644835
Genome browser
AA seq
1139 aa
AA seq
DB search
MLNNQISAKDTIVSNAYGSSFSILFNEYLKQNRDFNLIVAEDSQQAHRIYDELKYLNKDS
KIEVFYFPNLEILPYDRFSAAIDIISRRQEILHKLTQNPKNTLVITSISNTLRKLPPAKF
IKEHSFILKIGDTLDITKQKVLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPVGSKVAFRI
DLFDDEVDTIKELDTETQRSGKEIKSINIMPSHELIYNSQNTSLALEKLKILCGEQSQNS
TIATYIKNNEYFSGIEFYLPLFYPELVSLFDYLPKSANIHLIDNISNSIEAFSEEVKYRY
NELKHDIDRPVLPYQELFYSQKEVKDLYEKHQHIKWFQQPKSKSKTLNIDHLEKISANYK
LANPFRDLQKLIDSSNFDKVIFSTDSNGRGEILLEHLNKLQLNIRIAKSFDDALKIKDKF
CLIISPFQEGVIIDKKIILITESDLFPEHIQNSSKISEHDHHPTVDLKDLTDLKPGMHVV
HIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSITEKIALNK
LGSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPD
QLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ
HYNSFKDRFANTAVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLISSKIDFNNLG
LLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL
SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVDTIQKKKEILQELFPRLRIAIAHGQ
MSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG
RSHHQAYAYMLVPSEGSITKDATKRLEAIGSTDSLGGGFTLANHDLEIRGAGEILGQEQS
GNIDGIGLNLYMDLLDKTIANLKAGKELNIEDVINSTVCEVELNIPTLIPDYYISDVNTR
LNIYKRISKADHKELLNIKIELIDRFGRLPVEVLYLLKVAHIKIDAISLGIGQIKMFATS
GKINFANTSKFEPQKLIKLIQAQPADFRITKEQDILITKNTKTAEQRIEFIDNFLKKIA
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaatcaaatatctgcaaaagatactattgtgtctaatgcttatggttcttct
tttagcattttgtttaacgaatatcttaaacaaaatcgcgactttaatctaatagttgct
gaagactctcaacaagcacatagaatttatgatgaattaaagtatctaaataaagactcg
aaaatagaagtattctatttccctaacttagaaatactaccttatgatagattttctgca
gcgatagacattatctcaagaagacaagaaatattgcataaacttacacaaaatcctaaa
aataccctagtaataacaagtatttcaaatacattaagaaaacttccacctgccaagttt
atcaaagaacatagtttcatactcaagattggtgatactctagatataaccaaacaaaaa
gtattactaaccgaagctggatataccttagtaaacaatgtttttgaaaaaggtgaattt
agtattcgtggtagtattattgatattttcccagttggatcaaaagtagcttttagaatt
gatctttttgatgatgaagttgatacaatcaaagagttagatacagaaactcaacgctct
ggcaaagaaataaaatctataaatattatgccttcacatgagctgatttataactcacaa
aatacttctttagcattagaaaaactcaaaatactatgtggtgaacaatcgcaaaattca
actattgcaacatatataaaaaataatgaatactttagtggtatagagttctatttacca
ttattttatcctgaacttgttagtctatttgactacttaccaaagtctgcaaatattcac
cttattgacaatattagcaactcaattgaagcattctcagaagaggttaaatatagatat
aacgagttaaagcatgatattgatagacctgttttgccatatcaagaacttttttattca
caaaaagaagtcaaagatctgtatgaaaaacatcaacatatcaaatggttccaacaacca
aaatctaagtctaaaactctaaatatagatcatctagaaaaaatctcagcaaactataaa
ttagctaatccttttagggatttacaaaaattaatagatagctctaattttgataaagtt
atattttcaactgattcgaatggacgtggtgaaatacttttagaacatttgaataaatta
cagttaaatataagaattgcaaaaagttttgacgatgctcttaaaatcaaagataaattt
tgtttaattatctcaccttttcaagaaggtgtaataattgataagaaaatcatattaatt
actgaatcagatctttttcctgagcatattcaaaactcttctaaaatatcagaacatgat
catcaccctactgttgaccttaaagatctgacagatctaaaacccggaatgcatgtagtc
catattgatcatggtattggcagatacgaaggcttagaaagtattgaattaaatggtaaa
aaagatgagtttatacttctaagatatgcaaatgatgcaaaaatttatgtgccaatcact
tcattaaatctaatttctatttataactcttctattactgaaaaaatagcattaaataaa
cttggttcagataaatggaaaaagcaaaaagaaaagactatcaaaaagattatcgatgtt
gctgcaaatctcttagagatatatgcaaaaagagaaatgcgacaaggattcagcaattct
ttagatgaagaagaatatctacgattctgtgcagattttccatatgaagagactcctgat
caactcttagcgataaatgatgtcttcaaagacatgatatctgctaagccaatggacaga
cttatttgtggtgatgtcggttttggaaaaacagaaattgcgatgcgagcagcatttcta
gcaactcaaaatcaaaagcaagtagcaattctagtacctacaactattttagctcaacaa
cactataatagttttaaagacaggtttgctaatactgctgtaaatatcgaggttattact
cgttcaaaaacagcaaaagcacaagaagagctttttgataatctcaaaaaaggtactgtt
gatataataattggtacacataagcttatatcctcaaaaattgactttaataacttggga
ttattaattattgatgaggagcatcgctttggtgtcgcgcaaaaagaaaaattaaaagcc
ctgaaagctgaaatagatattctaacaatgtcagcaactcctattccacgtagtttaagt
atggcattttcagcacttcgtgacttatcaattattgcatctccccctgctaaacgttta
tctgtaaaaacatttgttaaggaatatgataataacataattcgtgaagctgtaagtcgt
gaaaccattcgtggtggacaaattttctatctttataataaagtcgatactattcaaaag
aaaaaagaaattcttcaagaattattccctcgtttgagaatagctattgctcatggtcag
atgagtgaaaaagaaattcaaaagataatgtttgactttaaacataataaatatcatata
ttactttgtaccacaattattgaaacaggtattgatattccaaatgctaatactttaatt
atcgaagatgctaataatctaggtttagctcaattacatcaactaagaggcagagttgga
cgttcacaccatcaagcttacgcatatatgctagttcctagtgaaggtagtattacaaaa
gatgctacaaaaaggttagaggctattggtagcactgattcacttggtggtggctttaca
ctcgcaaatcatgatttagaaattcgtggagctggagagattcttggacaagaacaaagt
ggtaatattgatggtataggtctaaatctatatatggatctcttagataaaacgattgct
aatcttaaagctgggaaggagctgaatattgaagatgtcattaattcaactgtttgtgaa
gttgaacttaatattccaacactaattcctgattactatattagtgatgtaaatactagg
ttaaacatttataaacgaatttcaaaagccgatcataaagaattattaaatataaaaatt
gaacttattgatcgttttggtaggctacctgttgaagtgttatatcttctaaaagttgct
cacatcaaaattgatgctataagtctaggcattggacaaataaaaatgtttgccacatct
ggtaagattaattttgctaatacatctaaattcgagcctcaaaagctaataaagctaatt
caagctcagcctgctgattttagaatcacaaaagaacaagatatacttatcacaaaaaat
actaaaactgctgaacaaagaatagagtttatagataattttttgaaaaaaatagcctaa
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