Francisella philomiragia GA01-2801: LA02_1880
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Entry
LA02_1880 CDS
T03621
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpj
Francisella philomiragia GA01-2801
Pathway
fpj03410
Base excision repair
fpj03430
Mismatch repair
fpj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LA02_1880 (recJ)
03430 Mismatch repair
LA02_1880 (recJ)
03440 Homologous recombination
LA02_1880 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpj03400
]
LA02_1880 (recJ)
DNA repair and recombination proteins [BR:
fpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LA02_1880 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LA02_1880 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA02_1880 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF7222
Motif
Other DBs
NCBI-ProteinID:
AJI57161
LinkDB
All DBs
Position
1856133..1857875
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AA seq
580 aa
AA seq
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MLIRQKQTNQDILSTLLSKGYDLFLARIICSRVSNFENIDLILKGSIKDLSSPFLFKDID
KAVDRLFQALQNNKVIGLETDHDCDGQTSHAILYEALTKIFNYPKDKIRSYIGHRMLEGY
GLSESLMNRILTDSNRPSLIITADNGSTDEPRIAVLKQNGIDTIVTDHHGIPPEGAPKSA
IAVLNPTQHDCNYPDKAIAGCMVAWLFMTALRRKYLQNGKSLSKSYGLSNLLDFVAIGTV
ADCVSMANSHNNRIVTKLGIEQLKNNDRLCWDFLDKEKLSSEYISFSIAPLLNSDGRVSD
ALGSVSFLLENDERKIEETYENLTKQNSQRKEIQKKLTHEAITKAYQLDNDSNSLCILLD
DGHSGIHGITASRVKEMFGKPVIIFSETQNDPNLISGSARSVDSINIKTILDTIALKSPA
LMIKYGGHKGAAGLTINKSDFDTFYDLFESEIINFIKNDSISLEPILEYDFELDENDFKL
QTLEKIESLEPFGREFEKPLFYNSFTIENLRLVGKDKNHAQLILRYKNIPSIKAIWFNAL
ENKIIEQIGIGDTIRACYELQKEEFLGQTNLSLNIKLIEK
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttaataagacaaaaacaaactaatcaagatatattatctaccctattatcaaaaggt
tatgacttatttttagcacggattatctgttctagagtaagtaattttgagaatattgat
cttatactaaaaggctctataaaagatctatcatctccatttctattcaaagatattgat
aaagctgtagatagactttttcaagcattacaaaataataaagtcattggactagaaaca
gatcatgactgtgatggtcaaacatctcatgcaattttatatgaagctctgacaaagata
tttaattatcctaaagataagattcgctcctatataggtcatagaatgctagaaggatat
ggtctatcagagtctttaatgaatagaatattaacagacagtaatagacctagtcttatc
ataacagctgacaatggttcaacagatgagcctaggattgctgttcttaaacaaaatggt
attgatactatcgtaactgatcaccatggtattcctcctgagggagcacctaaaagtgct
atcgccgtactaaaccctactcaacatgattgtaattatccagataaagctatagctggc
tgtatggttgcttggctttttatgacagctcttcgtagaaaatatctgcaaaatggtaaa
tcattatctaagtcttatggattaagtaatttacttgattttgttgcaattggtacagtt
gcagactgtgttagtatggcaaatagtcataataaccgtattgttacaaaactaggtata
gagcaacttaagaataacgatcgtctatgttgggacttcttagataaagagaaactatca
agtgagtatattagtttcagtatagctcccttgctaaatagtgatggaagagtttctgat
gcactagggtctgttagctttttgcttgagaatgatgaacgcaaaattgaagaaacgtac
gaaaacctaactaaacaaaatagccaacgtaaagaaattcaaaaaaagcttactcatgaa
gcaataaccaaagcatatcaattagacaatgatagcaactcactatgtatattacttgat
gatggccactctggaattcatggtattacagcaagtagagtcaaagaaatgtttggtaag
cctgtgattattttttctgaaacacaaaatgatcctaacttaatatcaggttctgctagg
agtgtagatagtattaatattaaaacaatacttgatactatagcacttaaatcgcctgct
ttaatgataaaatatggtggtcataaaggtgctgcgggcttaacaataaacaaatctgat
ttcgatactttttatgatttatttgaaagtgaaattatcaatttcattaaaaatgatagt
atatctttagagcctattttagagtatgattttgaacttgatgaaaatgatttcaaacta
caaactctagaaaagatagaatctcttgaaccatttggtagagaatttgaaaaaccacta
ttttacaacagttttactatagagaatctacgtttagttggtaaagataaaaatcatgcc
caactaattttacgctataaaaatattccttcaatcaaagcgatatggtttaatgcctta
gaaaataaaataattgaacaaataggtattggcgataccataagagcctgttatgaactt
caaaaagaagaattcctcgggcagacaaacttatctctcaatattaaacttatcgaaaaa
tga
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