Francisella philomiragia GA01-2801: LA02_697
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Entry
LA02_697 CDS
T03621
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fpj
Francisella philomiragia GA01-2801
Pathway
fpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA02_697 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpj03021
]
LA02_697 (rpoB)
03400 DNA repair and recombination proteins [BR:
fpj03400
]
LA02_697 (rpoB)
Enzymes [BR:
fpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA02_697 (rpoB)
Transcription machinery [BR:
fpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA02_697 (rpoB)
DNA repair and recombination proteins [BR:
fpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA02_697 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
DUF8806
Motif
Other DBs
NCBI-ProteinID:
AJI56906
LinkDB
All DBs
Position
662304..666380
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYRKFLNADDAKGRLHSGLELVLKQSF
PVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKEALPSEKVVE
DIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYR
GSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEEILNRFSDSKTISFNNKGFALK
LDDLSSMKGEVLKFDIIDEKDNTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVA
KDIVNEATGEVIAYANDDVTENLLEACVEAGMLELEVIDFITTERGRYISDTLKYDLTKN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDNVSKDI
YTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVNG
KVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII
ARNAGEIAEVDSNRIVVKVDTEKSKTSKLVDIYSLTKFKRSNKNTCINQRPIVNVGDKIE
TGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK
DFDEEFAVIESVVKSSIETDVIGAKIQKAKGLKKGAVLTKEFLATLPFSKWLEISFEDEK
LEQKVQNAREYYEEAKIAVDARFEAKKKSIMQSNELSPGVLKTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
KIEQTLEKTRKAAELRKTLEEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFD
GAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNI
VDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgcaaagagtttggggttcttcctcat
atcttagatgtgccatatttactttccattcaaacagagtcttatagaaaatttttaaat
gcagatgatgcaaaaggtagacttcactctggtcttgaattagtgcttaagcaatctttt
cctgtagaaagtaaaaatgggcaatatgaacttcattatgtcgattatcaaattggtgaa
cctacttttgatgaaacagagtgtcaggtacgtggtgctacatacgatgctccattaaat
gtgaagttgagattggttgtatataacaaagaagcccttcctagcgaaaaagtggtggag
gatattagagaagaatatgtctatatgggcgatattcctcttatgacaactaatggtact
tttataattaatggtacagaaagagtagttgtatcacagttacatagatcaccaggtgta
ttctttagtaaggatgattcagaggaaggtgcgttttcggcacgtattattccttacaga
ggttcatggcttgattttgagtttgactcaaaaggtattatatgggctagaattgacaga
aaaagaaaattttgcgctacagtaattttaaaagctcttggatatacgcaagaggaaata
ttaaatagattctctgatagtaagacaattagttttaataataaaggttttgcacttaag
cttgatgatctttctagtatgaaaggtgaagtgcttaagtttgatattattgatgaaaaa
gataatacaattgttaagaaaaataaaaaattaacatctagagatattaagaaaatcaaa
gatgcgggagttgattctgtagcgattgattttgatttagttagtactcttagagtggca
aaagatatcgttaatgaagctacaggtgaagtgatagcttatgctaatgatgatgttaca
gaaaatttattagaagcatgtgtggaagcgggcatgcttgaattagaagttattgatttt
ataactactgaaagaggtagatatatatcagataccctaaaatatgatcttactaaaaat
acagatgaagcacttgtagaaatatataaggttcttagacctggtgatcctccagcagca
gcttctgtgaaagcgctatttgagggactattctttattgaaagtagatatagcttatct
gatataggtagaatgaagctaaatgcaagattaggttctgataatgtatccaaagatatt
tatactttagaaaatagtgatattgtaggtgttatcgaagagcttattaatatccgtgat
ggtaaaggcaaggttgatgatatcgatcatttaggtaatagacgtgttcgttctgttggt
gagatggttgagaaccagtttagaattggtctttatagagtagaaaaaggtatccgtgag
agtatgtctttggtacacaaagataagcttatgcctaaagatattgttaactctaaacca
attacagcagcaataaaagaattttttacatcgggtgctttatctcagtttatggatcaa
gataatccactatctgaagtaactcataaaagaagaatttcagcactgggtcctggtggt
ttatcgcgtgatagagcaggctttgaagttcgtgatgttcacgcaactcactatggtaga
ttatgtcctattgagactccagagggtccaaacattggtctgattaattcattggcaagt
tatgcacgagttaatgattatggctttttagaagcaccatatagaaaagtagtcaatggt
aaagtaactaatgaaattgagtatttatcagctattgatgaagaccattacgtgattgcc
caagcatcaactaaacttgataaaaataaccactttgtagaagatcttattcagtgtcgt
tctggcggtgaggcaatatttactgagtcaagtagagttcagtatatggatgtttctgct
aaacagatggtttcagcagctgcagcattaataccattcttagagcatgatgatgctaac
agggtattgatgggtgcaaacatgcaacgtcaagctgtgccaacgcttaaatctgaaaag
cctctagtcggtactggtatggagaagattgttgcgagagactctggtaactgtattatc
gcaagaaatgctggtgagatagcagaagttgattctaatagaatagttgttaaagttgat
actgaaaaatctaaaacaagcaagttagttgatatttacagcctgactaagtttaagcgt
tcaaataagaatacttgtatcaatcaacgtccaatagttaatgttggcgataagattgaa
actggtgatattttggctgacggttttgcaactgattttggtgagttatcacttggccat
aatcttatggttgctttcatgccgtggaatggttataactttgaggattcaattttactt
tctgagagaatagtaaaagatgataagtacactagtatccatattgaagagtttacatgt
gtggctcgtgatactaaattaggtcctgaagaagtaacagcagatattccaaatgtaagt
gagtcaagtcttgctaagcttgatgagtcaggtattgtccatatcggcgctaatgttgag
gcaggagatattcttgtcgctaagattacgccaaaagctgaacagcagttaactcctgaa
gaaagacttcttagagcaatctttaatgaaaaagcatcaaatgttgctgatagttcatta
agaatgcctagtggtacttcaggtactgtaattaatgttcaggtttttgaaaatgataaa
ggtggcaagagtaaaagagctcttaaaattgagaaagaactaattgataaagcgcgtaaa
gatttcgatgaagaatttgctgtgattgaatctgtagttaaatcatctatcgagacagat
gtgattggagctaagatacaaaaagcaaaaggacttaagaaaggtgctgttcttacaaaa
gaatttttagcaactttacctttttctaaatggctggaaatttcttttgaagatgaaaaa
cttgagcaaaaagtacagaatgctagagagtattacgaagaagcaaaaatagctgtagat
gctagatttgaagctaagaaaaaatctatcatgcaaagtaatgagttatctcctggtgta
cttaagactgttaaagtttttgtcgctattaaaaagcgtattcagccaggtgataagatg
gctggacgtcatggtaacaaaggtgtggtttcacgagtgttaccagtagaggatatgcca
tatatggaagatggtactcctgtagatgtctgtttgaatccactaggtattccttcgcgt
atgaatatcggtcagattctagaggctcatttaggattagcttcttatggcttaggcaag
aaaatagagcaaactctagaaaaaacaagaaaagcagcagagttaagaaaaactttagaa
gaagtctataatagtgtaggtgacaagaaagttgatcttaaagctttaaatgatgaagag
atattgaatctttgtgaaaatctaaaaggaggagtgccaattgctacccctgtatttgat
ggtgcaaaagaagaagatatcaaatcattgctaaaaataggtggctttgcaactaatggt
cagatgaaactatttgatggtcgtaccggtaaaccatttgataggcatgtaacggttggt
tatatgtatatgcttaagttagaccatttagtagatgataaaatgcatgctagatcaact
ggatcttatagcttagttacgcaacaaccattaggtggtaaagcgcaatttggtggtcaa
agattcggtgagatggaagtttgggcgttacaagcatatggtgctgcttatactctaaga
gagatgttaacggttaagtcagatgacataactggtagatctaagatgtataagaatata
gttgatggtaagttaactatgaatgtagatgttccagaatcattcaatgttttaagaaat
gaagttagagcattgggtatagatatggattttgactattcatctgaggaagaataa
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integrated database retrieval system
