Francisella philomiragia GA01-2801: LA02_861
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Entry
LA02_861 CDS
T03621
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fpj
Francisella philomiragia GA01-2801
Brite
KEGG Orthology (KO) [BR:
fpj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpj03019
]
LA02_861 (hrpA)
Enzymes [BR:
fpj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LA02_861 (hrpA)
Messenger RNA biogenesis [BR:
fpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LA02_861 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
NTPase_1
AAA_23
RsgA_GTPase
HA2_N
nSTAND3
T2SSE
ABC_tran
ResIII
Flavi_DEAD
NACHT
Motif
Other DBs
NCBI-ProteinID:
AJI57508
LinkDB
All DBs
Position
831506..835306
Genome browser
AA seq
1266 aa
AA seq
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MNTNKTLFNDYLNQIPTKLRGRFISAINNNKFPRQQLLTDLQLLAEQTSQKVLPKITYPD
LPVAEKVNDIKKLIQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAAR
SIASRVATEIEDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDE
AHERSLNIDFLLGCIKKILPYRPDLKVIITSATIDHQKFIDYFQNAKDITISGRTYPVEI
HYQNDEDFEEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQDLRFTEVLPLF
SRLSNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRL
PIEKTSQASANQRAGRCGRLSAGVCIRLYSEEDFNNRKEYTDPEILRTNLASVILQMLFL
KLGSIQDFPFIDSPDSRFIKDGFKLLFELRAISELNYSKPKITDDGIKMAIMPLDPKLAK
IVIEGHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHNVDKDKSSDFIAILNLANR
LNSDLKGLSNREKKEYFKKNFISPVRFNEWNDIYRQIVEVVHQFKWKLSPNEKLDYENLH
KAIASGFLSNIGFNYENAEYLGARGLKFFIFPGSSQFKVKPKWLLSSEIVETTKTYARNV
AKIEPEWLENLAEHLIKKHYDEPVWSKKRRAVVVNERVTLYGLEIVSKRSVQYAKINPQE
AREIFIREALVNGDFDSKAYFYQQNLKLINQVEELENKSRRKDILVDEEVMFAHYDGFIP
DDVCSGATFDKWLKSVTKEQQKGFIFDIESLMQHDAKEITQQKFPDVLTIADMHLPLEYH
FDPLDERDGVTVTVPIVFINDINPTVLEWGVYGFLYDKIVALLRALPKNIRKNCVPVPTY
AQAIFESIDFDKDRYSPLKSVIAKHITRIVGFVVDETVWQDEELEKHLVLNVKVVDEHGK
TLAVGKDIYILKQKLKNLVAKPKQEVDETVYYDWDFSYIAMTSQIKEYGITVKVYNCLEE
YKDGVRLSYKATFDEAKLCMQKSLKRLIKLRLQNQLSKNIKSNDLTSLSMSLKLSDSKDN
VVGKAIDLSFFDNIELPYTKADFEKFYALGMRKFASNKTKVEALLLEITKFKSQLEKKLN
VKKIPLNFIELFTDVRHEFTELFTDDYISQSVEFLQRYKYYLQALENRLEKAKLNLQRDR
GYQIEVNELRSKLAKKITANHIGKSELIGIRVSNLIQELWVSWYLQSVKTIESVSYKKIL
AYINEI
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaataaaactttatttaatgattatcttaatcagatacctaccaaacttcgt
ggcaggtttatatcagccataaataacaataagtttccaagacagcagttactgactgat
ttacagctcttggcggagcaaactagccaaaaggttttgcctaaaataacttatccggat
cttcctgttgctgaaaaagtcaatgatataaaaaagcttatacaagataatcaagttatc
gttgtagcaggagagacaggttctggtaagtcaacacaattgcctaaaatatgtcttgat
ttagggctaggcaagcgcggattaattggacatactcaaccaagaagacttgcggctaga
tctattgctagtagagttgctactgagatcgaagatcaatcaaaagtatcttttaaaata
cgcttttcagatcaaacttctgaaaatactttaatcaaagtgatgacagatggtgtgcta
ctgtctgaaattaagaatgataggtttttatcacaatatgaggttatcattattgatgag
gctcatgaaagaagtttaaatattgactttctacttggttgtataaaaaagatattacca
tatagacctgatttaaaagtaatcattacctcagcaactatagatcatcagaagtttata
gattattttcaaaatgctaaagatattacaattagtggtagaacataccctgttgaaatc
cattatcaaaatgatgaggattttgaagagttttcattacaagagagaatattgtatgct
cttgatgaacttggcagaggagacgttttagtctttttgcctacagaaagagatatccat
gaaacattagcatatttaaacaaacaagaccttagatttacagaggttttacctttgttt
tcgagattatcaaataaagatcaaaacaaaatattcaacccagagggttctgtacgtagg
gttatcttagcaaccaatgttgctgaaacatctctgacagtaccgcgtatcaaatatgtg
attgattcaggattagcgagaataagtagatatagctatcgcaccaaggtgcagcgccta
ccgatagaaaaaacctctcaagcaagtgctaatcaaagagccggtcgatgtggtagatta
tcagctggtgtttgcatacgtttatatagtgaggaagattttaataatcgtaaagaatat
actgaccctgagatacttcggacaaatttggcatctgttatcttgcagatgttgttttta
aagctaggaagtattcaagattttccatttatagattcgcctgattcaagatttattaaa
gatggctttaaactcttgtttgaattacgagctatttccgagcttaattattcaaagcct
aaaattactgatgatggtatcaaaatggcaattatgccattagatcctaagttggcaaaa
atagttatagaaggtcatagacaaaatactcttagagagattgtctccattgttagcttt
ttaagtgtacaggacccgcgtgagagacctctgaattttcagcaaaaagctgatgaaaaa
cacaatgttgataaagataaatcttctgatttcatagcgattttaaatttggcaaataga
ctaaactctgatttaaaaggtttatcaaatagagaaaaaaaagaatattttaaaaagaat
tttatttcacctgttagatttaatgagtggaatgatatttatcgacaaattgttgaagtt
gttcaccagtttaaatggaaattatcgccaaatgaaaagcttgattatgaaaacctacac
aaagccatagccagtggatttttgagtaacattggatttaattatgaaaatgctgagtat
ctaggagctagggggcttaagttttttatattccctgggtcttctcagtttaaagtaaag
ccaaagtggttactttcatcggaaatagttgaaactaccaagacatacgctcggaatgtt
gcaaaaatagagcctgaatggttagagaatttagcagagcatcttataaaaaaacattat
gatgagcctgtttggagcaaaaagcgtagagctgttgtagtcaatgaaagagtaactctt
tatggcttagagatagtttcaaaaagatctgtgcaatacgctaagataaatcctcaagag
gctagagagatattcattcgagaagctcttgtaaatggtgattttgattctaaagcgtat
ttctatcagcaaaatctcaagcttataaatcaagttgaagagctcgaaaacaaatcacgc
cgaaaagatattttggtcgatgaagaggtaatgtttgcacattatgatggctttatccca
gatgatgtttgtagtggtgcaacatttgataagtggctaaagtcagtcacaaaagagcag
caaaagggctttatctttgatatagaaagtctaatgcagcatgatgctaaagaaattacg
caacagaagtttcctgatgtcttaactatcgcagatatgcatttgccattagagtatcac
tttgacccattggatgagagggatggtgtaacagttactgtaccaatagtttttatcaat
gatataaaccctactgttttagagtggggagtctatggttttttgtatgacaagattgtc
gctttgttacgtgccttaccaaaaaatattcgcaaaaattgtgtgccagtgccaacttat
gctcaagctatatttgaatcaatagattttgataaggataggtactctcctttgaagtct
gttattgctaaacatattacgcgaatagtgggttttgtggtagatgagacagtgtggcag
gatgaggagctggagaaacatcttgtgctgaatgtaaaagttgttgatgagcatggtaaa
acactagcagttggtaaggatatttatatattaaagcaaaagcttaaaaatcttgtagct
aaaccaaaacaagaagttgatgagacggtttattatgattgggatttttcatatattgct
atgactagtcaaatcaaagagtacggtataacggtcaaagtctataattgtctggaggag
tataaagatggtgtgaggctatcttataaggcaacattcgatgaagccaagctatgtatg
caaaagtctttgaaaaggttaattaaactacgcttacagaatcagttatcaaaaaatatc
aaaagtaatgacctaacaagcttatcaatgtcgttaaaactaagtgactcaaaagataat
gtggttggtaaagctatagatttgagtttttttgataatattgaattgccatataccaaa
gcagattttgaaaaattctatgctttggggatgcggaaatttgcttcaaataaaaccaaa
gttgaagcattgcttttagaaataacaaagtttaagtcacagcttgaaaaaaaacttaat
gttaaaaaaataccacttaattttatcgagcttttcacagatgttaggcatgagtttact
gagctttttacagatgattatatatctcaatccgtagaatttttacagaggtataaatat
tatcttcaagccttagaaaataggctagaaaaagctaaattaaatctccaaagagatcga
gggtatcaaatagaagttaatgagctaagatctaaattggctaaaaaaataacagctaat
catattggtaaaagtgagttgattggtataagagttagtaacttaattcaggaattatgg
gtgtcatggtatttacaaagtgttaagaccatcgagtcggtatcatataagaaaatttta
gcttacataaatgagatatag
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