Flavobacterium psychrophilum v4-33: IA06_05545
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Entry
IA06_05545 CDS
T03661
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fpk
Flavobacterium psychrophilum v4-33
Pathway
fpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IA06_05545 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpk03021
]
IA06_05545 (rpoB)
03400 DNA repair and recombination proteins [BR:
fpk03400
]
IA06_05545 (rpoB)
Enzymes [BR:
fpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IA06_05545 (rpoB)
Transcription machinery [BR:
fpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IA06_05545 (rpoB)
DNA repair and recombination proteins [BR:
fpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IA06_05545 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
KOW2_Spt5
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
AIG41299
UniProt:
A0A8G2LAB7
LinkDB
All DBs
Position
complement(1226354..1230166)
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPAYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNNFVLEFIDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFQSDKDILEIFDLAEEIKVSKSGLKKYIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNVEEIVESNVKSILLHKEDNN
VVDYSIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRINKKLGLDTPMEKQVLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTNGVVDLTSVPKYLSAEEEEGMLIAQANIQMDENGKITADNVIARQ
EGDFPVIDPTAVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAP
IVGTGLERQVASDSRVLINAEGAGVVEYVDADMITIKYDRTDAERAVSFESDEKTYKLIK
FRKTNQGTSINLKPIVRKGDKVIKGQVLCEGYATQNGELALGRNLKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRTQDKDALSDLEMEFEVKFVELKDKLVDKLFTIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLTRGQWVADDETNKMVNDLIHNYKIKLNDLQGALRREKFTIT
VGDELPAGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQNLGRKYATPIFDGASLDQINAITDEAGVPRFGHTH
LYDGGTGERFHQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgataacaaatcagactgaaagattgaattttgcctcaacaaaaaatattcctgcttat
ccagattttctagatgttcaggttaaatcttttcaagatttctttcaattagaaacgaaa
tctgacgaaagaggcaacgaagggctttacaataccttcatggaaaactttccaattaca
gatactagaaataactttgtattggagtttattgattactttgtagacccacctcgttat
acaattcaagaatgtatagagagaggtcttacttatagtgtgccactaaaagcacgttta
aaactatattgtacagacccagaacatgaagattttgaaactatagtacaagatgtatat
cttggaactattccttacatgacacctagcggaactttcgttattaacggtgctgagcgt
gtggttgtttctcaattacatagatcaccaggtgttttctttggacaatcattccatgca
aatggaaccaaattatattctgcgcgtgttattccttttaaaggatcatggatagaattt
gctaccgatatcaatagtgtaatgtatgcttatatcgatagaaagaaaaaattacctgtt
actactttattccgtgctatcggttttcaaagtgataaagatatccttgaaatttttgac
cttgctgaagaaattaaagtttctaaatcaggacttaaaaaatatattggaagaaaactt
gctgctcgtgtattaaacacttggcacgaagatttcgtcgatgaagatactggtgaagta
gtttctatcgaaagaaatgaaatcatcttagatcgtgatacgattttagataaagataat
gtagaagaaattgtagaatctaacgtgaaatctatcttgttgcacaaggaagataataac
gttgtagattattcaatcattcataatacattacaaaaagatccaaccaactctgaaaaa
gaagccgttgagcacatctacagacaattgcgtaatgcagaaccgcctgatgaagaaact
gctcgtggtattatagataaattattcttctctgaccaacgttacaatttaggtgaagta
ggtcgttatagaataaacaaaaaattaggtttagatactccaatggaaaagcaagtgctt
accaaagaagatatcattaccatcgtgaaatatttgatcgagttaatcaatgcgaaagca
gatattgatgatatcgatcacttatcaaaccgtcgtgtaagaactgtaggtgagcaatta
tctcagcaatttggcgttggtttggctcgtatggctagaactattcgtgagagaatgaac
gttagagataacgaggtgtttacacctatcgatttgattaatgctaaaacattatcatcg
gtaatcaactctttctttggtacaaaccagttgtctcaatttatggatcaaaccaatcca
ttagccgagattacacacaagcgtcgtttatctgccctaggaccaggtggtctttctcgt
gaaagagctggttttgaggtacgtgacgttcactacacgcactacggaagactttgccca
attgaaactcctgagggaccaaacattggattaatttcatctttgggtgtttacgcaaaa
gtaaacggaatgggttttatcgaaacgccgtatcgtaaagtaacaaatggtgttgttgat
ttaacttctgtccctaaatatttaagtgccgaagaagaagaaggaatgttaattgcacaa
gcaaacattcaaatggatgaaaatggtaaaattactgccgataacgttattgctcgtcaa
gaaggtgattttccagtaatagacccaactgctgttcattataccgatgttgcgcctaat
caaattgcatctatctcagcttcattaattcctttcttggaacatgatgatgcgaataga
gccttgatgggatctaacatgatgcgtcaagctgttcctcttattcgccctgaagcacca
attgttggtacaggtttagagcgtcaagtagcctcagattctagagtattaataaatgct
gaaggagctggagttgtagaatatgttgatgcagatatgattaccatcaaatacgataga
acggatgccgaaagagcagtaagtttcgaatctgatgagaagacatataaattaattaaa
tttagaaaaacgaatcaaggaacttctatcaacttaaaacctatcgtaagaaaaggggat
aaagtaataaaaggacaagtgctttgtgaaggatatgcaacacaaaacggagagttagct
ttaggtcgtaacctaaaagtagcctttatgccttggaaagggtataacttcgaggatgcg
attgtaatttctgaaaaagtagttcgtgatgatatttttacctcaatccacgtagatgat
tattcattagaagttagagatacaaaattaggtaacgaagagttaactaatgatattcct
aatgtttctgaagaagctaccaaagatttagatgaaaacggaatgattagaattggtgcc
gaagttaaacctggcgatattctaataggaaaaattacaccaaaaggagaatcagatcca
actccagaagagaaattgcttcgtgccatcttcggggataaagctggtgatgtaaaagat
gcttcattaaaagcttctccatcacttcatggtgttgttttagataaaaaactattcgca
agagcagtaaaagacaaacgtaaacgtacacaagataaagacgcattgtctgatctggaa
atggaatttgaagttaaatttgttgaattaaaagacaaattagtagacaaattatttacc
atagtaaacggaaaaacatcgcaaggtgtgatgaatgatttgggtgaagaagttttacca
aaaggtaaaaaatatactcaaaaaatgttatatgcagttgaagattttgctcacttaaca
agaggacaatgggttgctgacgatgaaaccaataaaatggtgaacgacttaattcataac
tacaaaattaagttaaacgaccttcaaggcgcattaagaagagagaaatttaccattaca
gttggagatgaattgccagcaggaatcttgaaattagccaaagtttatatcgccaaaaaa
cgtaagttaaaagtaggtgataaaatggcgggtcgtcacggaaataaaggaatcgttgca
cgtattgtgcgtcacgaagacatgcctttccttgaagacggaacaccagtagatattgta
ttgaatccacttggagtgccttctcgtatgaacattggtcagatttacgaaaccgttcta
ggatgggcaggacaaaacttgggacgcaaatatgcaacaccaattttcgacggagcatca
ttagatcaaataaacgcaattactgacgaagctggggtaccacgtttcggacacacacat
ctttatgatggtggtacaggagagcgtttccaccaagccgcaacagttggagttatctat
atgttgaaacttggacacatggttgatgacaaaatgcacgcacgttctatcggaccatac
tcacttattacacaacaaccattgggtggaaaagctcaatttggagggcagcgttttgga
gagatggaggtttgggcacttgaagcttatggagcatcaagtacactacgtgaaattttg
acagtaaaatctgatgatgttattggtagagcaaaaacttacgaagcaatcgtgaaggga
gaaactatgccagaaccaggattacctgaatcgttcaatgtattaatgcatgaactaaaa
ggtcttggattagatattcgtttagaagaataa
DBGET
integrated database retrieval system
