| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
fpk Flavobacterium psychrophilum v4-33
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:fpk00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IA06_05545 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:fpk03021]
IA06_05545 (rpoB)
03400 DNA repair and recombination proteins [BR:fpk03400]
IA06_05545 (rpoB)
Enzymes [BR:fpk01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IA06_05545 (rpoB)
Transcription machinery [BR:fpk03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IA06_05545 (rpoB)
DNA repair and recombination proteins [BR:fpk03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IA06_05545 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1226354..1230166)
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| AA seq |
1270 aa
MITNQTERLNFASTKNIPAYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNNFVLEFIDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFQSDKDILEIFDLAEEIKVSKSGLKKYIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNVEEIVESNVKSILLHKEDNN
VVDYSIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRINKKLGLDTPMEKQVLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTNGVVDLTSVPKYLSAEEEEGMLIAQANIQMDENGKITADNVIARQ
EGDFPVIDPTAVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAP
IVGTGLERQVASDSRVLINAEGAGVVEYVDADMITIKYDRTDAERAVSFESDEKTYKLIK
FRKTNQGTSINLKPIVRKGDKVIKGQVLCEGYATQNGELALGRNLKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRTQDKDALSDLEMEFEVKFVELKDKLVDKLFTIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLTRGQWVADDETNKMVNDLIHNYKIKLNDLQGALRREKFTIT
VGDELPAGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQNLGRKYATPIFDGASLDQINAITDEAGVPRFGHTH
LYDGGTGERFHQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE |
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| NT seq |
3813 nt +upstreamnt +downstreamnt
atgataacaaatcagactgaaagattgaattttgcctcaacaaaaaatattcctgcttat
ccagattttctagatgttcaggttaaatcttttcaagatttctttcaattagaaacgaaa
tctgacgaaagaggcaacgaagggctttacaataccttcatggaaaactttccaattaca
gatactagaaataactttgtattggagtttattgattactttgtagacccacctcgttat
acaattcaagaatgtatagagagaggtcttacttatagtgtgccactaaaagcacgttta
aaactatattgtacagacccagaacatgaagattttgaaactatagtacaagatgtatat
cttggaactattccttacatgacacctagcggaactttcgttattaacggtgctgagcgt
gtggttgtttctcaattacatagatcaccaggtgttttctttggacaatcattccatgca
aatggaaccaaattatattctgcgcgtgttattccttttaaaggatcatggatagaattt
gctaccgatatcaatagtgtaatgtatgcttatatcgatagaaagaaaaaattacctgtt
actactttattccgtgctatcggttttcaaagtgataaagatatccttgaaatttttgac
cttgctgaagaaattaaagtttctaaatcaggacttaaaaaatatattggaagaaaactt
gctgctcgtgtattaaacacttggcacgaagatttcgtcgatgaagatactggtgaagta
gtttctatcgaaagaaatgaaatcatcttagatcgtgatacgattttagataaagataat
gtagaagaaattgtagaatctaacgtgaaatctatcttgttgcacaaggaagataataac
gttgtagattattcaatcattcataatacattacaaaaagatccaaccaactctgaaaaa
gaagccgttgagcacatctacagacaattgcgtaatgcagaaccgcctgatgaagaaact
gctcgtggtattatagataaattattcttctctgaccaacgttacaatttaggtgaagta
ggtcgttatagaataaacaaaaaattaggtttagatactccaatggaaaagcaagtgctt
accaaagaagatatcattaccatcgtgaaatatttgatcgagttaatcaatgcgaaagca
gatattgatgatatcgatcacttatcaaaccgtcgtgtaagaactgtaggtgagcaatta
tctcagcaatttggcgttggtttggctcgtatggctagaactattcgtgagagaatgaac
gttagagataacgaggtgtttacacctatcgatttgattaatgctaaaacattatcatcg
gtaatcaactctttctttggtacaaaccagttgtctcaatttatggatcaaaccaatcca
ttagccgagattacacacaagcgtcgtttatctgccctaggaccaggtggtctttctcgt
gaaagagctggttttgaggtacgtgacgttcactacacgcactacggaagactttgccca
attgaaactcctgagggaccaaacattggattaatttcatctttgggtgtttacgcaaaa
gtaaacggaatgggttttatcgaaacgccgtatcgtaaagtaacaaatggtgttgttgat
ttaacttctgtccctaaatatttaagtgccgaagaagaagaaggaatgttaattgcacaa
gcaaacattcaaatggatgaaaatggtaaaattactgccgataacgttattgctcgtcaa
gaaggtgattttccagtaatagacccaactgctgttcattataccgatgttgcgcctaat
caaattgcatctatctcagcttcattaattcctttcttggaacatgatgatgcgaataga
gccttgatgggatctaacatgatgcgtcaagctgttcctcttattcgccctgaagcacca
attgttggtacaggtttagagcgtcaagtagcctcagattctagagtattaataaatgct
gaaggagctggagttgtagaatatgttgatgcagatatgattaccatcaaatacgataga
acggatgccgaaagagcagtaagtttcgaatctgatgagaagacatataaattaattaaa
tttagaaaaacgaatcaaggaacttctatcaacttaaaacctatcgtaagaaaaggggat
aaagtaataaaaggacaagtgctttgtgaaggatatgcaacacaaaacggagagttagct
ttaggtcgtaacctaaaagtagcctttatgccttggaaagggtataacttcgaggatgcg
attgtaatttctgaaaaagtagttcgtgatgatatttttacctcaatccacgtagatgat
tattcattagaagttagagatacaaaattaggtaacgaagagttaactaatgatattcct
aatgtttctgaagaagctaccaaagatttagatgaaaacggaatgattagaattggtgcc
gaagttaaacctggcgatattctaataggaaaaattacaccaaaaggagaatcagatcca
actccagaagagaaattgcttcgtgccatcttcggggataaagctggtgatgtaaaagat
gcttcattaaaagcttctccatcacttcatggtgttgttttagataaaaaactattcgca
agagcagtaaaagacaaacgtaaacgtacacaagataaagacgcattgtctgatctggaa
atggaatttgaagttaaatttgttgaattaaaagacaaattagtagacaaattatttacc
atagtaaacggaaaaacatcgcaaggtgtgatgaatgatttgggtgaagaagttttacca
aaaggtaaaaaatatactcaaaaaatgttatatgcagttgaagattttgctcacttaaca
agaggacaatgggttgctgacgatgaaaccaataaaatggtgaacgacttaattcataac
tacaaaattaagttaaacgaccttcaaggcgcattaagaagagagaaatttaccattaca
gttggagatgaattgccagcaggaatcttgaaattagccaaagtttatatcgccaaaaaa
cgtaagttaaaagtaggtgataaaatggcgggtcgtcacggaaataaaggaatcgttgca
cgtattgtgcgtcacgaagacatgcctttccttgaagacggaacaccagtagatattgta
ttgaatccacttggagtgccttctcgtatgaacattggtcagatttacgaaaccgttcta
ggatgggcaggacaaaacttgggacgcaaatatgcaacaccaattttcgacggagcatca
ttagatcaaataaacgcaattactgacgaagctggggtaccacgtttcggacacacacat
ctttatgatggtggtacaggagagcgtttccaccaagccgcaacagttggagttatctat
atgttgaaacttggacacatggttgatgacaaaatgcacgcacgttctatcggaccatac
tcacttattacacaacaaccattgggtggaaaagctcaatttggagggcagcgttttgga
gagatggaggtttgggcacttgaagcttatggagcatcaagtacactacgtgaaattttg
acagtaaaatctgatgatgttattggtagagcaaaaacttacgaagcaatcgtgaaggga
gaaactatgccagaaccaggattacctgaatcgttcaatgtattaatgcatgaactaaaa
ggtcttggattagatattcgtttagaagaataa |
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