Flavobacterium psychrophilum v4-33: IA06_05840
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Entry
IA06_05840 CDS
T03661
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fpk
Flavobacterium psychrophilum v4-33
Pathway
fpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IA06_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpk03019
]
IA06_05840
03400 DNA repair and recombination proteins [BR:
fpk03400
]
IA06_05840
Enzymes [BR:
fpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IA06_05840
Messenger RNA biogenesis [BR:
fpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IA06_05840
DNA repair and recombination proteins [BR:
fpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IA06_05840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
HTH_40
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AIG41351
UniProt:
A0A076NYI3
LinkDB
All DBs
Position
complement(1282942..1285137)
Genome browser
AA seq
731 aa
AA seq
DB search
MNSHEIDIHKELKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQG
GTAIVVSPLIALMKNQVDAIRSLSSEAGIAHVLNSSLTKTEIAQVKKDISSGLTKLLYVA
PESLTKEEYVTFLQKEKISFVAIDEAHCISEWGHDFRPEYRNLKNIIKLLGDVPIIGLTA
TATPKVQEDILKNLDMANANTFKASFNRPNLYYEVRTKTKNVESDIIRFIKQHKGKSGII
YCLSRKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
VGFALLQEVVAYAETSMSRRKFLLHYFGEEFDSETGDGCDMDDNMRNPKAQVEAKDQVVK
LIEVIRDTKHIYKSKEIVYTLMGRMNAMIKAHKTDAQKLFGCGKAFDERYWMAVLRLALV
GGLLSKDIETYGIIKVTEKGLDFIKNPQSFMMSEDHEYSETEDEAIVSASKVSGTADEVL
MSMLRDLRKKVAKKLGVPPFVVFQDPSLEDMALKYPITLDELSNVHGVGEGKAKKYGKDF
IELISSYVEDNEVMRPDDLVVKSTGANSVNKLYIIQNIDRKLSLKDIAKAKGLDMNTLLK
EMEQIVNSGTKLNIKYWIDEMLDDDQQEEIHDYFMESESDDIEDALKEFDGDYDINELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaattcacacgaaattgatattcacaaggaattaaaaaaatattttggttttaaccaa
tttaagggtttacaagagcaggtaataaaaagcattgtggccaagcataattcgtttgta
attatgcctactggtggcggtaaatcgttatgttaccaattgcctgcattaatgcaggga
ggaacagcaatcgttgtttcgccacttattgctttgatgaaaaaccaagtagatgccata
agaagtttgtcttctgaggcaggaattgcacatgttcttaactcttctctaacaaaaacc
gaaattgctcaagtaaaaaaagacatatcctctgggctaactaaactgttgtatgttgcg
ccagaatctcttacaaaagaagaatatgtcacttttcttcaaaaagaaaaaatatcattt
gtagccatagacgaagcccattgtatctcagaatggggacatgattttagaccagaatac
aggaatttaaagaacattataaaattacttggcgatgttccaattataggactaacagcc
accgcaacgccaaaagtacaggaagatattctgaaaaatttagatatggctaatgccaat
acatttaaagcatcatttaatcggccaaatttatattacgaagtacgcacaaaaacgaag
aatgtcgaatctgatattattcgttttatcaagcaacacaaagggaaatctggaattata
tattgtctaagccgtaaaaaagtagaagccattgcccaagttttgcaagtaaatggaatc
tcggcagtgccttatcatgcaggtttagatgcaaaaaccagagccaaacaccaagatatg
tttcttatggaagatgtagatgtggttgtggcaacaatcgcttttggtatgggaatagac
aaaccagatgttcgttttgtaatacaccatgatattccaaaatccctagaaagttattat
caagaaacaggtcgtgccggtcgtgatggaggcgaaggacattgtttggcttattattcc
tataaagatgtcgaaaagctagaaaaattcatgtctggtaaaccagttgctgaacaagaa
gttggttttgcattgttgcaagaagtggtcgcttatgcagaaacttcgatgtcaagacgt
aaattcttattgcattattttggagaagaatttgactcagaaacaggcgacggttgcgat
atggatgacaatatgcgcaatccaaaagcacaagttgaagccaaagatcaagtcgtaaaa
ctcatagaagttatacgagataccaagcacatatacaaatcgaaagaaattgtatatacg
cttatgggacgaatgaatgccatgattaaggcgcataaaacagatgctcaaaaacttttt
ggctgcggaaaagcattcgacgaacgttactggatggctgttctaagattagctttggtc
ggcgggttattgtcaaaagatatagaaacttacggtattattaaagtaacagaaaagggg
ttagattttataaaaaacccacaatcctttatgatgtccgaagatcacgagtatagcgaa
accgaagacgaagccattgtttcggcatcaaaagtatcaggaacggcagacgaagttcta
atgtctatgctgcgtgatttgcgtaaaaaagtagctaaaaaactaggagttccaccattt
gtagtttttcaagacccatcgctcgaggatatggcacttaaatatcctattactttagac
gaattaagtaatgtacacggagtaggagaaggaaaagctaaaaaatacggaaaagatttt
atagaacttatttcttcttacgtagaagataatgaagttatgcgtccagacgacttggtt
gtcaaatctactggtgcaaattcagtgaacaaactctatattattcagaatatagacaga
aaattatcgctcaaagatattgccaaagcaaaaggtttagatatgaatactttgcttaaa
gaaatggagcaaattgtaaattcgggtaccaaactaaacataaaatattggatagatgaa
atgctagacgacgatcagcaagaagaaattcacgattattttatggaatcagaatccgat
gatatcgaagacgcactcaaagaatttgatggcgattacgatattaatgagctgcgatta
atgcgaattaagtttattagcgaagtagcgaattaa
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