Flavobacterium psychrophilum v4-33: IA06_09305
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Entry
IA06_09305 CDS
T03661
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fpk
Flavobacterium psychrophilum v4-33
Pathway
fpk03030
DNA replication
fpk03430
Mismatch repair
fpk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IA06_09305
03430 Mismatch repair
IA06_09305
03440 Homologous recombination
IA06_09305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpk03032
]
IA06_09305
03400 DNA repair and recombination proteins [BR:
fpk03400
]
IA06_09305
Enzymes [BR:
fpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IA06_09305
DNA replication proteins [BR:
fpk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IA06_09305
DNA repair and recombination proteins [BR:
fpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IA06_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
GIY_YIG_2
RNase_H_2
DNA_pol_A_exo1
DUF7508
DUF2430
Motif
Other DBs
NCBI-ProteinID:
AIG41987
LinkDB
All DBs
Position
2006046..2007407
Genome browser
AA seq
453 aa
AA seq
DB search
MYAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQFISLVNPEIPIQPFVVKLTGINNAM
LVSAPKFHEVAKRIVEITKDCIIVAHNTVFDYRILRTEFSRLGYDFQAKTLCTVELAKIL
IPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLFKMLLDKDLEKIIVKEQIKTEITK
GIAPKLLNIIESLPNKTGVYYIHKENGTIIFIGKSRNIKKRVNQHFTGITKSALKIQQEV
FTVTYQETGSELIALLKETEEIKRNRPIYNRISPKTHFPVAIYCEKDANGYLNLKLQKFD
GRKKEITAYTSLQEGKNNLFRITSQYNLCQKLTGLYETKTHCFQQKINECDGACIGKITP
QEYNKRVQEFITKSTLENQSIIIIDSGRTTREHSAVLIENGVYKGYAFFDLNYQISNIQI
LKNLITPMPNNRDTRNIIQGYLRKNKVMKIMKF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcaatactagacatagaaacaacaggaggacaattcaatgaagaaggaattacc
gaaatcgccatctataaatttgatggtcatcaaatagtagaccaatttattagtttagta
aatcctgaaatcccaattcaaccgtttgtagtaaaacttacgggaataaataatgctatg
ttggtatctgcacccaagtttcacgaagtagccaaacgcattgtagaaatcacaaaagat
tgtataattgttgcacacaataccgttttcgattaccgaattcttcgcacagaatttagc
cgtctaggttacgattttcaagcaaaaacgctatgcacagtcgaactagctaaaatacta
attccagaacaaccctcatatagcttaggaaaattagttcgagcactaggaatcccaata
actaacagacatcgtgccgaaggagatgcactagcaacagtcaaattatttaaaatgctg
ttagacaaagatttggaaaaaatcattgtaaaagagcaaattaaaaccgaaattaccaaa
ggaattgcaccaaaattattaaatattatcgaatccctgcccaacaaaacaggcgtttac
tacattcacaaagaaaacggaactattatttttattggcaaaagcagaaatatcaaaaaa
agagtaaaccagcattttacaggaatcacaaaaagtgccctaaaaatacaacaagaagtt
tttaccgttacttaccaagaaactggaagcgaactcatagcgctactaaaagaaaccgaa
gaaataaaaagaaaccgacctatttataacagaatatcgcctaaaacccatttcccagta
gccatatattgcgaaaaagatgccaatgggtatttgaatctaaaattacaaaaattcgac
ggtcgaaaaaaagaaatcacagcctacacaagccttcaggaaggaaaaaacaatttattc
agaataacatcacaatacaatttgtgccaaaaattaactggtttatacgaaacaaaaact
cactgttttcagcagaaaataaacgaatgcgatggcgcttgtataggcaaaattacgcca
caagaatacaacaaacgagtgcaagaatttattacaaaaagcaccctcgaaaaccaaagc
atcatcattatagacagcggtagaaccaccagagaacacagtgctgttctcatagaaaat
ggtgtatataaaggctatgcttttttcgatttaaattatcaaattagcaatatacaaata
ctaaaaaacctcattacaccaatgcccaacaaccgtgacacccgaaatatcatacaaggc
tatttacgtaaaaacaaagtgatgaaaatcatgaaattttaa
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