Ferroglobus placidus: Ferp_0301
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Entry
Ferp_0301 CDS
T01172
Name
(GenBank) RNA binding S1 domain protein
KO
K03679
exosome complex component RRP4
Organism
fpl
Ferroglobus placidus
Pathway
fpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ferp_0301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpl03019
]
Ferp_0301
Messenger RNA biogenesis [BR:
fpl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ferp_0301
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Ferp_0301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
ECR1_N
RRP40_S1
S1
KH_6
KH_1
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADC64481
UniProt:
D3S2F1
LinkDB
All DBs
Position
257264..257944
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AA seq
226 aa
AA seq
DB search
MRTIVLPGDLLATNPKVAGHGTYVENGKVYAKFLGLLDKTETSVRVIPLRGKYIPSVGDV
VVGVVKEVTVNGWVVEINSPYMAFLPAQENPEMKPNKKPNEVLDIGDIIVAKIINIDPKM
KATLTMKDKMCRPIRFGRIVAINPARVPRVIGKKGSMIKLFKNELGVNVIVGQNGLIWLN
GDRRKVNIVEEAIYIIEQEAHTEGLTDRIAEFIKKKKGELENAGGS
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgatagttctccccggagatttgctcgccacaaatccgaaagtggctggacac
ggaacttacgtggagaacggaaaggtttacgctaagtttctgggattgctggataaaacg
gaaacttccgttagagtaattcccctaagaggaaagtacattccctcggtaggagatgta
gttgtgggagtcgtgaaggaagttaccgtaaacggatgggttgttgaaataaattcccct
tacatggctttccttcccgctcaggaaaatccggagatgaagccgaacaaaaagcccaac
gaagttttggacataggagacataatagttgcgaagatcatcaacatagatccgaagatg
aaggcgacgctgacgatgaaggataagatgtgtcgcccgatacgcttcggaagaatagtg
gcgataaatccggcgagagtgccgagagttataggcaagaagggaagcatgataaagctc
ttcaaaaacgagcttggagtgaacgtgatagtcggtcagaacggcttaatctggttaaac
ggtgacaggaggaaggtaaacatagtggaggaggcgatatacataatagagcaggaggca
cataccgaaggtttgacggatagaatagccgagtttattaagaaaaagaagggtgagctc
gaaaatgcaggaggaagttaa
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