Ferroglobus placidus: Ferp_0303
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Entry
Ferp_0303 CDS
T01172
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
fpl
Ferroglobus placidus
Pathway
fpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ferp_0303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpl03019
]
Ferp_0303
Messenger RNA biogenesis [BR:
fpl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ferp_0303
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Ferp_0303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ADC64483
UniProt:
D3S2F3
LinkDB
All DBs
Position
258662..259441
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AA seq
259 aa
AA seq
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MNDDILAEVRRDYVLSKIRDGERIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLV
GVKMQPGEPFPDAPNKGIIITNAELVPLASPTFEPGPPDENAIELARVVDRGIRESEAVD
LEKLCIEEGEKVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDFPLPV
RDLPVAITSLIVENKILVDPIKDETSVAKNFLTITTDSEDNIVAIQKSGSYLLPEEKFYE
AIELSIRKAREVRKLLAEV
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatgacattcttgccgaagttagaagggattacgttctctcaaagattagggac
ggagagagaatagacggtaggaagttcgacgaaataaggaaaatagagattcaaaccgga
gtaatcgagaaggctgaaggttccgctttggtaaaactcggcaatacccaagtgttagtt
ggagtgaaaatgcagcccggagaaccttttccagatgctccaaataagggaattatcatc
acgaacgccgagctcgtgcctttagcttctccaactttcgaacccggtcctccggatgag
aacgctatagaacttgcgagagtcgttgacaggggaattagagagagcgaagccgttgat
ttggagaagctttgcatagaggaaggtgagaaggtctggctgatatttatagacatctgg
gctttggatgatgacggaaatctgctcgacgcttctgctttgggagcaatagctgctttg
cttaatacgacagttccggcagaaagatttgaagttggagacgactttcccttgccagtt
agagatctgccggttgcgattacctcgcttatagttgaaaacaaaatactcgtggatccg
ataaaggatgagacgagcgttgcaaagaactttttgacgataaccaccgacagcgaagac
aacatcgtggcgattcagaagagtggctcttacctactcccagaggaaaagttttatgaa
gcgatcgagttgagcattaggaaagcgagagaagtaagaaaactgctggcagaggtgtaa
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