Ferroglobus placidus: Ferp_1234
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Entry
Ferp_1234 CDS
T01172
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
fpl
Ferroglobus placidus
Brite
KEGG Orthology (KO) [BR:
fpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fpl03016
]
Ferp_1234
Enzymes [BR:
fpl01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Ferp_1234
Transfer RNA biogenesis [BR:
fpl03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Ferp_1234
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
PHB_acc_N
DUF4761
TGS
Motif
Other DBs
NCBI-ProteinID:
ADC65388
UniProt:
D3RY25
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Position
1063472..1064356
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AA seq
294 aa
AA seq
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MKGELKGGYVELNFSQRLYSRNFGRRENSKLMLTLEESSYLMSKGTLEVYEKGRKVELPE
LLKRAKLTEYFVFERLRESGKKVRFGEFDDYVPVSEREVLSFEDLEKFAEKRLAVVDEES
DVTFYRISRFDDFGRHEEKLREVRGFLCGERVIVEDVEIFRKYFYGTEKSGYVALSLVES
LYLLEKGFLIMDEEEAEELRSAVDENLYEVYRDLRERRFMVKTGFKFGSDFRVYEAVRSV
KELTHSKYLVKLREEVSMRELAGDTRLAQSVRKKMIYAKVNGKPRYLIVERVRI
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtgagcttaaagggggttacgtggagttgaatttctcccagagattgtattcg
agaaatttcgggagaagagaaaactccaaactcatgctaactttggaggagtcttcatac
ttgatgtcaaagggaacgcttgaagtttacgaaaagggaagaaaagtcgagcttcccgag
cttttaaagagagcgaaactgacagaatacttcgttttcgaaagactgagagaaagtggg
aagaaagtgagattcggggagttcgacgattacgtgccagtttccgaaagagaggttttg
agtttcgaagatctggaaaagtttgccgaaaagaggcttgctgttgttgatgaggagagc
gacgtaactttttacagaatttcgaggttcgacgattttgggagacatgaagaaaagctg
agggaagttagagggtttctctgcggggagagggtgatagttgaagacgtcgaaatcttc
agaaagtacttttacggaacggaaaaaagcggttacgtggctttgtctctcgtagaatcg
ctttacctcctcgaaaagggtttcttgatcatggacgaagaggaggctgaagagcttaga
tctgctgttgacgaaaacctctacgaagtttacagagacttgagggagagaaggttcatg
gtaaaaaccggatttaagttcggaagcgacttcagggtttacgaggctgttaggagcgta
aaagagcttacccactcaaagtacctcgtgaagttgagagaagaggtgagcatgagagaa
ttagccggcgacacaagacttgctcaaagcgtgagaaagaagatgatttacgctaaagtc
aacggaaagccgaggtatctaatcgtggagagggtgagaatttaa
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