Ferroglobus placidus: Ferp_1678
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Entry
Ferp_1678 CDS
T01172
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpl
Ferroglobus placidus
Pathway
fpl03410
Base excision repair
fpl03430
Mismatch repair
fpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ferp_1678
03430 Mismatch repair
Ferp_1678
03440 Homologous recombination
Ferp_1678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpl03400
]
Ferp_1678
DNA repair and recombination proteins [BR:
fpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ferp_1678
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ferp_1678
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ferp_1678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
Spermine_synth
Motif
Other DBs
NCBI-ProteinID:
ADC65824
UniProt:
D3RZB1
LinkDB
All DBs
Position
complement(1457315..1458610)
Genome browser
AA seq
431 aa
AA seq
DB search
MLEMIKHEFEKAKIMLDKHDYVRIYAHYDADGISGAAIVSIALMRMGKKVHVSFLKGLNE
SFEPEDLTIFVDMGSGYPEKISEIKEDVIIVDHHFPVGRIEKENLAHINPHLAGIDGSFE
MSASATAYFFAEYLGNNYDLTALALIGIIGDKQKLRGGNLEVVKRGLERGYLERREGLKM
ISGKVREVLLYSTEPFLNFYGNEDELDKFLEEVSVDGEKEFDELGKEEESRLANGIAIRL
LKMNCYPGIFEDVFGEKFYLKNELIKNSIMLSEVVNACGRKSANSIAFAICMRDESYLEK
AVSLWREFQEELLEEVVKRIEEVKEGFCIRYLIMEDAPTTGPIASILSRYIFSDKPFIAI
NVKKSGEVKVSARGNEKLAEKVNLGEVMRKAAEKVGGSGGGHSVAAGANINSDKVEEFLK
EVDRLCCSSLS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaatgatcaagcacgaattcgagaaagctaaaatcatgctcgacaagcacgat
tacgttagaatttacgctcactacgatgcagacgggatttccggagcagctatagtatcg
atagctttgatgagaatgggaaagaaagttcacgtttcctttctcaaaggtttaaacgag
agcttcgaacctgaagatcttactattttcgttgacatgggtagcgggtatcccgaaaaa
atttcggagataaaagaggatgtcataatcgtcgatcaccactttccggttggaagaatc
gaaaaagagaatttggctcacataaatccgcatcttgccggaatagacggatcttttgaa
atgtccgcaagcgccacagcctactttttcgccgaatacttgggaaacaactacgacctg
acggctttagctctaatcggcataataggagataagcaaaaactgagaggagggaactta
gaggtcgttaagaggggtttggagaggggctacttggaaaggagagaaggtttgaaaatg
atatccgggaaagtgagggaagtcctactatactcgacggaaccttttctgaacttctac
ggaaatgaagatgaactcgacaaatttctcgaagaggtgagcgtcgatggtgagaaggag
ttcgacgagctcggtaaagaagaggaaagcaggcttgctaacggaatagcaataagactg
ctgaagatgaactgctaccccgggattttcgaggacgttttcggagaaaagttctactta
aagaacgagctgataaaaaattcgataatgctcagcgaagtcgtgaatgcctgcggaaga
aagtcggcaaattcgatagcctttgcgatatgcatgagggacgaaagttaccttgagaaa
gctgtaagcctctggagggaatttcaggaagagcttttggaggaggtcgtaaaaaggata
gaggaggtaaaggaagggttctgcataaggtatttgataatggaagacgctccaaccacc
ggtccaatagcctcaatcctgtcgaggtacatcttttctgacaagccctttatagcgata
aacgtgaaaaagagcggagaggtcaaggtttctgcgagaggtaacgagaaacttgccgag
aaagtcaatttaggggaagtgatgagaaaggctgccgaaaaggtgggaggaagcggagga
ggacacagcgttgctgctggggcgaacataaactcggacaaagtagaggagtttttaaag
gaggtggacagactttgctgttcaagcttgagctga
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