Flavobacterium plurextorum: NLG42_00725
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Entry
NLG42_00725 CDS
T08840
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fplu
Flavobacterium plurextorum
Pathway
fplu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLG42_00725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fplu03019
]
NLG42_00725
03400 DNA repair and recombination proteins [BR:
fplu03400
]
NLG42_00725
Enzymes [BR:
fplu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLG42_00725
Messenger RNA biogenesis [BR:
fplu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLG42_00725
DNA repair and recombination proteins [BR:
fplu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NLG42_00725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
DUF1949
Phage_rep_O
DpnI_C
Motif
Other DBs
NCBI-ProteinID:
UUW09347
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All DBs
Position
141952..143847
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AA seq
631 aa
AA seq
DB search
MQEAQDILLKYWKHESFRPLQKEIIDSVLEGHDTFALLPTGGGKSICFQVPTMMREGICL
VISPLIALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQYGNYKFLYLSPERLQSD
WILERIKNLPISFIAIDEAHCVSQWGHDFRPAYLKISELKKHFPKIPFLALTATATPRVV
EDIKTELGLKDTKLFQQSFERKNIAYMVFEVEDKLYRVEQILKKNPQPSIIYVRNRKSCL
NISTQLQSLGFRATYYHGGLSAKEKDKNMQSWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENLENYYQESGRAGRNGEKAFSVLLYNNSDANQTEQQFLSILPDKKFLKTMYVKLC
NYFQIAYGEGLDDTFSFKLNHFCNKYDFPTLKTYNALQFLNQQGIITMSQEFSEKVTMQF
LIESKEVIRYTSLNQKDEEIILAILRTYPGVHEMKTPINLSLIAKKSNHTEEQITSLLEK
LRDKEIIEYKSKNNDATILFNEVREDDLTINRVSKYLEKQNQLKQEQLSSVLYYIKENKT
CKNRLVLDYFGEETNSNCGVCSYCITQKGKITEADSIADKILSLLKTASLTSREIQNQIK
LDASDIILVLQELLENNHIVILANNKYTLKS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagcacaagatattcttttaaaatactggaaacacgaaagtttcagacctctt
caaaaagaaattattgattcagttttagaaggtcatgatacttttgcactgctgccaaca
ggaggcggaaaatcgatttgttttcaggttccaactatgatgcgcgaaggaatctgcttg
gttatttcaccattgattgctttgatgaaagatcaagtagcgaatctgcaaaaaagagaa
atcaaagcaattgctcttaccggcggaattcatacggaagaaatcattgatcttttagac
aattgtcaatacggaaattacaaatttctttatctttcgccggagcgtttacaatcagac
tggatattagagcgcatcaaaaatcttcctataagttttattgccattgacgaagcgcat
tgtgtttcgcaatggggacacgactttagaccagcttatttaaaaatttcggaacttaaa
aagcactttcctaagattccttttttggccttgactgcaactgcaacaccaagagttgtt
gaagatattaaaactgaattaggtttaaaagatactaaactatttcaacagtcttttgaa
agaaagaatatcgcatatatggtttttgaagttgaagacaaactgtatcgtgtcgaacaa
attttaaagaaaaacccgcagccttctattatatatgtacgaaatagaaaatcatgctta
aacatttcaacacaattacaatcgcttggctttagagctacttactatcacggcggactt
tcggcaaaagaaaaagacaaaaatatgcagtcgtggatgtcggaacaagcgcaggttatt
gttgctacaaatgcgtttggaatgggaattgacaaggacaatgtaaaaacggtcattcat
acgcaattgcctgaaaatctagaaaattattatcaagaatcaggaagagcgggacgaaat
ggcgaaaaagccttttcggttttattatacaataactcagatgcaaaccaaactgaacaa
cagtttttaagtattctgcctgataaaaaattcctaaaaacgatgtatgtcaaactgtgt
aactattttcaaatagcatacggcgaaggtttagacgatactttctcttttaaattgaat
catttttgcaacaaatacgacttccctactttaaaaacttataatgctttacagttttta
aatcaacaaggaatcattacaatgtctcaggaattttcagagaaggttacaatgcagttt
ttaattgaatccaaagaagttattcgatatacaagtttaaatcagaaagacgaagaaatt
attttagcgattttaagaacttatcctggagttcatgaaatgaaaacgccgataaatctt
tcgcttattgcaaaaaaatcaaatcatacggaagaacagattacttctcttttagaaaaa
ctgagagataaagagattatcgaatacaaatctaaaaataacgatgcgacaatattattc
aacgaagttcgtgaagatgatttgaccataaatagagtttctaagtatctggaaaaacag
aatcagcttaaacaagagcagctttcatctgttctatattatataaaggaaaacaaaacc
tgcaaaaacagattggttttggattattttggagaagaaactaattcaaattgcggcgtt
tgctcgtattgcattacacaaaaaggaaaaatcactgaagccgattcgattgctgacaaa
atcttgtctttattaaagacggcatctttgacttcgcgagaaattcaaaatcagataaaa
ctagatgcatcagatataatacttgttcttcaagaattattagaaaacaatcatatcgtt
atattagcgaacaataaatacactttaaaatcataa
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