Flavobacterium plurextorum: NLG42_12975
Help
Entry
NLG42_12975 CDS
T08840
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fplu
Flavobacterium plurextorum
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fplu03009
]
NLG42_12975 (rlmD)
Enzymes [BR:
fplu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NLG42_12975 (rlmD)
Ribosome biogenesis [BR:
fplu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NLG42_12975 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
TRAM
PrmA
Methyltransf_15
FtsJ
PCMT
Alginate_lyase2
N6_N4_Mtase
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UUW07016
LinkDB
All DBs
Position
complement(2928453..2929865)
Genome browser
AA seq
470 aa
AA seq
DB search
MGRKNTDKVVFHQIQVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVVDVQTFKKRKAYYEG
KAVKFHELSEHRIEPICDHFGVCGGCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFE
TILGSEKQFFYRNKMEFSFSNSRWLTEKEIESKEDLGNRNALGFHIPKMWDKILDIQKCH
LQEDPSNAIRNEIRAFANEHNLAFFNPREHSGLLRTVMIRTASTGEIMVLIQFFENDKAN
RELILDHLYEKFPQITSLQYVVNAKQNDTIYDQDIKLYKGRDYILEEMEGLRFSINAKSF
YQTNSDQAYELYKITRDFAGLSGNETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILD
AKANAERNNITNCEFFVGDMKVVFNEEFIAQHGKPDVIITDPPRDGMHAAVIDQILKIAP
KKVVYVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaaaatacagacaaagttgtctttcatcaaatccaggttcttgatgctgga
gcaaaaggagtatcagtagcaaaagcacctgacggaaaagtaatctttattccgaatgta
gttccgggtgatgtagttgatgtacagacattcaaaaaaagaaaagcctattacgaaggt
aaagccgtaaaatttcacgaattatcagagcatcgtattgagcctatctgcgatcatttt
ggtgtttgcggtggttgtaaatggcaaaatatgaaatacagccaacagttgtattacaaa
caaaacgaagtaaaaaatcatttacagcgtattggaaaagttgagcttcctgaatttgaa
actattttaggttcggaaaaacaatttttctatagaaataaaatggaattttcattttct
aacagccgttggttaacagaaaaagaaattgaaagcaaagaagatttaggaaacagaaat
gctttaggatttcatattccgaaaatgtgggataaaattctagacattcaaaaatgtcac
ttacaagaagatccttcaaatgctattagaaacgaaatcagagcatttgcaaacgagcat
aatttagcattctttaatccaagagaacattctggtttattaagaaccgtaatgattcgt
acggcttcaactggcgaaattatggttttgattcagtttttcgaaaatgacaaagctaac
cgcgaacttattttagatcatttatacgagaaatttccacaaatcacttctttgcaatat
gtggtaaatgctaagcaaaacgatacaatctacgatcaagatatcaaactttataaagga
agagattatatcttagaagaaatggaaggtttgagattcagcatcaatgctaaatcattc
tatcaaacaaattctgatcaagcttacgaattatacaaaattacgcgtgattttgctggc
ttatcaggaaatgaaacggtttacgatttatatactggaacaggaactattgcacaattt
gtttctaaaaaagcaaaaaaagtaattggtgtagaaagtgtaccagaagcaattttagat
gcaaaagcaaatgcagagcgcaataatattacaaattgcgagttttttgttggtgacatg
aaagtggtattcaatgaagaatttattgctcagcatggtaaaccggatgttattattaca
gatccgccaagagatggtatgcacgcagccgtaatcgatcagattttaaaaattgctcct
aaaaaagtagtttacgtaagctgtaactcggcaacacaagctcgtgatttagcattgatg
gacgaaaaatacaaagttacccgcgttcgacctgttgatatgttcccacaaacacatcac
gttgaaaatgttgtacttttagaacttcgataa
DBGET
integrated database retrieval system
