Flavobacterium plurextorum: NLG42_14775
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Entry
NLG42_14775 CDS
T08840
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fplu
Flavobacterium plurextorum
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fplu03016
]
NLG42_14775
Enzymes [BR:
fplu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NLG42_14775
Transfer RNA biogenesis [BR:
fplu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NLG42_14775
Prokaryotic type
tRNA splicing ligases
NLG42_14775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UUW07370
LinkDB
All DBs
Position
3309415..3310806
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AA seq
463 aa
AA seq
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MGNKLTGKDLIKLGFPKNNSINIALGQINRYRKREKKESILTEAKDVLLNPENYDGHGTW
GKVAEGLIKPVQVRMHQLKTTRVPFTIFGENEIDQQAKFQLYDSLKLPVSVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGKEHQLEAILKDNTKFG
MYETHASRVDHEVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAEIENPENEW
KLDKGEYFAVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIAKAIGKRVVVTIENHHNFAWKEMVNGKECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNADSLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMANQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattaactggaaaagacctgattaaattaggttttccaaagaacaattca
ataaatattgctttagggcagataaacagatatagaaaaagagaaaaaaaggaatctatt
ttaacagaagcaaaagatgtactcttaaatcctgaaaattatgatggacatggaacttgg
ggaaaagtagccgaaggtttgataaaaccagttcaggttagaatgcatcagcttaaaaca
acaagagtgccttttacaatctttggcgaaaatgaaatagatcagcaggcaaaatttcaa
ctgtatgattctttgaagctgccagtttcagttgcaggagcattaatgccagacgcacat
tcgggttatggattgccaattggcggagttttggcaacagataatgctgtaattccgtat
ggagttggagttgatattggatgccgaatgagtctttcgattttcgatttgcccgcttct
catttcaaaggaaaagaacatcaattagaagcaattttaaaagacaatacaaaatttggg
atgtatgaaacgcatgcttcaagagtcgatcatgaagtgttttataaaagtgaatttcag
gatattccattactgaagaatcttttaccaaaagcctataaacaattaggaagttcaggt
ggaggaaatcattttgtcgaattcggaatcgctgaaattgaaaacccagagaacgaatgg
aagcttgataaaggcgaatattttgctgttctttcgcatagcggttctcgtggtttaggg
gcaaacattgcgaaacattatacgtatctggcaacaaagcagtgtccgttaccaaaaaac
gtacagcatttggcttggttagatttaaatacgcacgatggtcaggaatattggctggcg
atgaatttagcaggagaatatgcaaaagcttgtcatgacgatattcataggcgaattgca
aaagcaattggtaaacgagttgtagtaacaattgaaaaccatcacaattttgcatggaaa
gagatggtaaacggtaaggaatgtattgttcacagaaaaggtgcgactcctgcggcagaa
ggtcagttgggaattattcctggttcaatgactgcgccaggctacattgtaaaaggaaaa
ggaaatgcagatagtttaaattctgcttcacatggcgctggacgtttgttttctcgagcg
aaatgtaaaagtacgtttacgcaaagtgaaattaaaaaggttttgaaagcaaatgatgta
accttgattggaggaaacattgacgaagctccaatggcatataaggacattacaaaagta
atggcaaatcaaaccgatctggttgaagttttgggaacttttacgccgaagattgttaga
atggatcgttaa
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