Flavobacterium plurextorum: NLG42_22745
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Entry
NLG42_22745 CDS
T08840
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fplu
Flavobacterium plurextorum
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fplu03016
]
NLG42_22745
Enzymes [BR:
fplu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NLG42_22745
Transfer RNA biogenesis [BR:
fplu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NLG42_22745
Prokaryotic type
tRNA splicing ligases
NLG42_22745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Dpy-30
Motif
Other DBs
NCBI-ProteinID:
UUW08905
LinkDB
All DBs
Position
complement(5242001..5243422)
Genome browser
AA seq
473 aa
AA seq
DB search
MNTQINGTDILELGFPEGKIIGIALKINTKRNGFTRDEMIANFKNVLENPENYIDDKIFS
KLAVALIEKANEKPEDFIALNETPNAYSAYGLDHIEDGARKQMEVAMKLPVTIAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEAFYFENEAKFKRELIANSI
FGAGHGFHGQYKSDHAVLENDAFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DVVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDVCKLPEVARNLAYLDMNSQLGQE
YWMAMNLAGDYASACHEIIHNKMEKALGANILAKVENHHNFAWKEVWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTKAIKSITPTEMKSILK
DHGVTLIGAGLDEAPMAYKDIHQVMEAQQDLVDVVAKFTPKLVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacaaataaacggtacagatatattagaattaggattccctgaaggaaaaata
attgggattgctttaaaaataaataccaaaagaaacggattcacaagagatgaaatgatt
gctaatttcaaaaacgtcttagaaaatcctgaaaattatattgacgataaaatttttagc
aaactggcagttgctttaatcgaaaaagcaaatgaaaaaccagaagattttattgcttta
aatgaaactccaaatgcatattcggcttatggtttagatcatatcgaagacggagccaga
aaacaaatggaagttgccatgaaactgcctgttacgattgcgggagctttaatgccagat
gcgcatcaaggttacggattgcctattggtggagttttagccacaaaaaatgccattatt
ccgtatggtgttggtgttgatattggatgtagaatggcattgtctgtttatgatattcct
gaagctttttactttgaaaacgaagctaaatttaaaagagaattaattgcaaattccatt
tttggagcgggtcacggatttcatggtcaatataaatcagatcatgcagttttagagaat
gatgcttttaatatgaatccgtttgtgaagaacttgaaagataaagcttggtcgcaatta
gggtcttctggcggaggaaatcactttgtggaattcggaatcatggaatttgcaaaagat
gatgtcgttttaaatattccaaaaggaaaatacgtcgctttgttaacgcattccggttcg
cgcggaatgggcgcaacaattgcgggacattacactaaaatagccaaagacgtttgtaaa
cttcccgaagttgcaagaaacttagcgtatttggatatgaattcacaattaggtcaggaa
tattggatggcaatgaatctagcaggagattatgcttcggcttgtcatgaaattatccat
aataaaatggaaaaagctttaggagccaatattttagccaaagtcgaaaaccatcataat
tttgcatggaaagaagtttggaatggtgaagaagttattgtgcatcgaaaaggagcaact
ccggcaggaaaaggtgttatgggaatcattccgggaagtatgactgcaccaggatttttg
gttagaggaaaaggagaggagaacgccataaactcggcttcacacggagcaggaagacaa
atgagtagaacaaaagctataaaaagcattacaccaacagagatgaaatcgatcttgaaa
gaccatggtgtaacacttattggtgcaggccttgacgaagcgccaatggcttacaaggat
atacatcaggttatggaagcgcaacaagatttagttgacgtagttgctaaatttacaccc
aaattagtgagaatggcagatgatggaagtagagaagattag
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