Francisella philomiragia O#319-036: LA56_1135
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Entry
LA56_1135 CDS
T03618
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpm
Francisella philomiragia O#319-036
Pathway
fpm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA56_1135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpm03021
]
LA56_1135 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpm03400
]
LA56_1135 (rpoC)
Enzymes [BR:
fpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA56_1135 (rpoC)
Transcription machinery [BR:
fpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA56_1135 (rpoC)
DNA repair and recombination proteins [BR:
fpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA56_1135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AJI54995
LinkDB
All DBs
Position
complement(1162097..1166347)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLADTDLETEIESLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPENKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGENKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVEILDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDGQNIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVIDEKG
NELKSISLAVGAVLNVTDDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIAEEILLPKSRHLVVFDGEQVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILDEGDS
KFVKDESIELVRILEENDRLAKEGKRLVEYELTLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESNKIEKMREELGVEDNMIFTEASS
FNTEDTLFENQIEKEDKDINDDIEESLRNALESLDF
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaactacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggtcattcgttcatggtctcacggtgaagttaaaaaaccagaa
actataaattatagaacattcaaaccagagagagatggattattctgtgctaaaatcttt
ggtccaataaaagactacgaatgtttgtgtggtaagtataaaagacttaagcatcgtggc
gtagtatgtgagcgttgtggtgttgaggtagagcaggccaaagtacgtagagaaagaatg
ggtcatatagatttagtgtgtccagtagtacatatatggtatctaaaatctttgccttct
agaataggtctgtttcttgatatgccattaaagaatgttgagaaggttctatactttgaa
tcttacatagttacagatccaggcatgactccactagagaaaaaacagcttcttactgat
gatgagtatgctgaagctctagagaactatggttatgagtttgaagcatctatgggggca
gaagctataagagacttattagcagataccgatcttgaaactgaaatagagtctctacaa
gccgaatatgaagagagtaaatctacagctaaaaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcatctggaaataaacctgagtggatggtaatgactgtatta
ccagttttaccaccagatttaagaccattagttccaattgaaggtggtagatttgcaaca
tctgatcttaacgatttatatcgtagagtaattaatagaaacaatagacttaaaaaacta
ttggatctaaatgctccagatattattgttagaaatgaaaagagaatgttgcaagaagct
gtagatgcgttactagataacggtagacgtggtagggctgtaacaggttcaaataagcgt
ccacttaagtctcttgctgatatgataaaaggcaagcaaggacgtttccgtcagaacttg
cttggtaaacgtgtagactattctggtcgttctgtaattacggttggtccatctctaaga
ttgcatgagtgtggtttacctaaaaagatggcattagagctatttaagccttttgtatac
tctaagttaagattaggtggttatgcaacaactatcaaacaagctaagagaatggttgag
cttgaagaagctgttgtatgggatattttagaagttgttattaatgagcatcctgtatta
ctaaaccgtgctccaacacttcatagacttggtatacaggcattcgaacctaagctaatc
gaaggtaaggcgatacagctacatcctttggtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggctgtacacgtaccattaactgtagagtctcaattagaagctagagta
ttaatgatgtctacaaacaacatcttatctccagcatctggtcagccgattatcactcct
actcaagatattgtactaggtttgtactacattactagagagaaagaaggcgctcgtggt
gaaggaaaactattctcaaactatgatgatgtaagtagagcatataactctggcactata
gatattcatgctaaaattaagcttagaatagatagacaagtttttgatactaaaggcaat
acttataatgagaagggggttgtaaatactactgttggtagagcactacttcttaatata
ttgccagaaggtttgtcattctcattattaaataaagtacttgttaagaaagaaatttct
aagattattaatcaagcatttagagtgctaggtggtaaggcgactgtagttttagcagat
aaactgatgtatgcaggttttaaatattcgacattatcaggcgtttctgtgggtgttgat
gatatgacaatacctgaaaataaagaagctaaagtagaagaggcagaaaaagaaattaag
catattacggagcagtatcagtcttcattaattacagagaatgaaagatataataatatc
atcaatatttggagcaaaacttcggatgaggttggtgcttcgatgatggatgcgatttca
aaagatactgtaatggtaaatggtgagaataaagaaatcgaatcatttaactctgtatat
atgatggcaaaatcaggggcaaggggttcttataaccagatgagacagcttgcaggtatg
cgtggtctaatggctaagccagatggaacgatgattgaaactgctattactgcaaacttt
agagaaggcttgtcagtattgcagtactttacatctactcacggagctcgtaaaggtcta
gcagatacagcattgaagacagctaacgctggttacctaactcgtagacttgtggatgtt
gcccaagatttagttgttatcgaagaagattgtggtactgatgatggtttaatgttctca
gctattgttgaagatggcgaagttaaagttcctctagtagagagagctttaggtagaaca
ttagctgctgatgttgtgactgaaaagggagttgttctattagaagctggtactctactt
gatgaaaatcttgttgagatacttgacgataatggtattgacatgatcaaggttagatct
ccaattacatgtaagactcgtagaggcttatgtgctaaatgttatggtcgtgaccttgct
cgtgagagaaaggttaatgtcggtgagtctgttggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacgttccatactggtggtgcggcatcattaggt
attacagtatctgatattaaagttaagactgctggtaagattaagttcaaaaacatcaga
acagttacaaataaagatggtcaaaatatagttatatcaagagctggtgaaattatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggtgcagttgttcct
ttagcaagtggcaagggtgttgagattggcgatgttattgctacttgggatccgcatgct
cagccgttaattacagatgttgctggtaaagttgttttagaagacgttattgatggtatt
acatcaaagcatacatatgatgatttaactggtcagcaaactattgagataacttcaata
tctcaaagaacaacctctaagaacttaaagccagttgttaaagttattgatgaaaaaggc
aatgagcttaaatcaatttcattagctgtaggtgctgtattgaacgttactgatgattca
gtattagaggttggtgatgttgttgctaagattcctttagaaggatctaagaataaggat
attacaggtggtcttccacgagttgctgaactttttgaggctagacgacctaaagatgct
gcaatattatcgccttgcgatggtatggttagattgggtaatagagatactaaagaaaag
caaaggattgaaatcttggataagagtggtcatattgctgaagagatactattgcctaaa
tctagacatctagtagtttttgatggcgaacaggtatctaaaggcgacgtgttagccgat
ggtcctactgatccacatgatcttcttaagtataaaggcttagaagcgtttgctgactat
atcttgattgaagctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacaatcgttagacagatgttaagaaaagcaacaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgaattagtaagaatacttgaagaaaatgataggcta
gctaaagaaggtaagagattggttgagtatgagcttactctaatgggtatcactagatca
tctttatctacggagtcattcttgtctgcagcatcgttccaagaaacgactagagtatta
actgaggcttcgatacattctcaagttgatcaattaagaggacttaaagaaaacgttctt
attggtagactaatacctacaggtacaggtttagcggttagaaaagagtctaataaaatt
gagaagatgagagaagagctaggtgtagaagataatatgatattcacagaagcatcatca
tttaacactgaagatactctctttgagaatcagattgaaaaagaagataaagatattaat
gatgatattgaagagtcattaagaaatgctttggaatctttagatttctaa
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