Francisella philomiragia O#319-036: LA56_339
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Entry
LA56_339 CDS
T03618
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpm
Francisella philomiragia O#319-036
Pathway
fpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA56_339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpm03019
]
LA56_339
03009 Ribosome biogenesis [BR:
fpm03009
]
LA56_339
Enzymes [BR:
fpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA56_339
Messenger RNA biogenesis [BR:
fpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA56_339
Ribosome biogenesis [BR:
fpm03009
]
Prokaryotic type
rRNA helicases
LA56_339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
SNF2-rel_dom
Utp25_C
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJI55851
UniProt:
A0AAW3DAW7
LinkDB
All DBs
Position
361587..363332
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AA seq
581 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSD
VLVATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDELEL
DSDELLAVLTLLAQGKKSFFPREIQARDDRPQRDRNLRGNSRDGGRNDRFERRGDRSDRN
SRFDRSDKFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHI
CNISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNLTAQ
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattatagat
actgttataaaattaggttacgaaaatccaacaccaattcaacagtatgctattccatat
atcttatcgggtagagatgtgcttggtcaagcacagacgggtacgggtaaaacagcagct
tttgcattacctttaataaataatatggatttagaatctagagatagagctccacaagtt
ttggtattagctccaacaagagagttagctatccaggtagcagagcaatttcaagctttt
gctaagaatataccaaacctagatgttgcgtgtatctatggtggccaagagtatggttct
caaataagagcacttaagcaaggagtaaaagttgtagttggtactactggtcgtgtgatg
gatcacatcgaaaaaggtacattacagcttgataatctaagagcattagtattagatgaa
gctgatgagatgcttagaatgggctttattgatgatgttagatatgttctaagccatgta
tcagatgaatgccaaagattgcttttttcagcgactattcctactgatatagcagatatt
atccaagaatatctaagaaatccttgtaagatacaagtaaaagcaaaaacaaaaactgca
aatactgtgacacaaaaattcatagtaataaaaggctttagaaagatagatgcgttagat
agattgcttgaagttgaagaaaccgatggtgttattatctttgttaaaactaagacaagc
actattgaagtagctgataatctaaaagctcttggttatagagtagcagctattaatgga
gatatgcaacaatctcaacgtgaatatatagttgatcaatttagaagcgctaaatctgac
gttttggttgctactgatgttgttgctagaggtatagatcttgagcgtattagtcatgta
attaactatgatatgcctaatgattctgatacgtatgtacatagaattggtcgtacaggt
agggctggacgtgagggaatttcaatttctctagttccattaaaggagatgagatttttg
cgtactttagagagatttacaggctctccaatgcaagaagtgtttatgccaagtgcaaaa
gatttagcacaaagtagaatagatcatttcaagactcgaatagcttcagcattagataaa
aataaatctttggataattataaagaaattattacgagtatacgtgatgagctagagtta
gactctgatgagcttttggctgtacttacattattagctcaaggtaagaaatcattcttc
ccgagagaaatccaagctagagatgatagacctcaaagagatagaaatttaagaggtaac
tctagagatggcggcagaaatgataggtttgagcgcagaggcgatcgtagtgatagaaat
agtcgttttgatagatctgataaatttgacagatcagacaggtctgatagaaagcctcgt
agagctgtaaatattgatttgactacatataaacttgaagttggtcgtgataatgatgtt
cagccaagaaatatagtaggtgctatagctaatgaaggaaatattgatagcaagcatatt
tgtaatatctctatccaaaaagatcatacattagtagatttgccagcaaatttatctcca
aaagttataagtcaccttagaaatgtttgggttgctggcaaaaaattaaatcttactgct
caataa
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