Francisella philomiragia O#319-036: LA56_724
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Entry
LA56_724 CDS
T03618
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fpm
Francisella philomiragia O#319-036
Pathway
fpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA56_724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpm03019
]
LA56_724
03009 Ribosome biogenesis [BR:
fpm03009
]
LA56_724
Enzymes [BR:
fpm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LA56_724
Messenger RNA biogenesis [BR:
fpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA56_724
Ribosome biogenesis [BR:
fpm03009
]
Prokaryotic type
rRNA processing factors
LA56_724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Flu_C_NS1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
AJI55835
LinkDB
All DBs
Position
727392..730061
Genome browser
AA seq
889 aa
AA seq
DB search
MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEDKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDTLVELWDSIFKAYHKIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDVKRQ
LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF
QMQRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVSPKEDNKLE
NKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQYNNKDKAQ
KPQKSQDNRPQKDINQRDNRKANNDRSDNKNNNKDQKPQVQKSQDNRQERDNNQRNDRKN
NDNRNDRNKNKLSSDKFDKKSNNRGSSRSNNLNLNNAEEVVDITQLKYQNQTAEKTDNIK
KVISKNPEEFVSVMVKDVLENYNSLKDDGATKVATEEKAKTSKYLKFDTVLVDKEITLLK
EAARQAEKAKQAEKIQNTEVEDSNNIHAEIKETIEIVDEVVVKEEQSKKAKLEKDDKTSE
QNSVKKEKPKTTKNNKKEKTVEKANKQNQPEPEYINYSPALDFESQSII
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatactaataaatagtaaaagtagtgaagaaacaagaatcgctactctagat
aacggaaaacttattgatttagatattgaaaatgttgatagagaacagaaaaaagccaat
atttataagggctatatttctagaattgaaccgagcttaaatgcaatatttgtcaactat
ggtgaagataaaaatggttttttaccattcaaggaagtttctgagtattatctaaaagac
gtaccaaatggtgaaaatattgcacatcttctttcagaaggtcaagagttaatagtacag
attgacaaagaagagcgtggtgataaaggtgcagctttaactacatttataacacttgca
ggctcatacatggtattgctaccaaacaacccagatggtggcggtatttcacgtcgtgta
gagggtgaggatagggaaaaacttaagaaatacctaaaagatttaaatatccctaaaaat
atgagtgtaattgcaagaactgcttgtgtagagtgttcttttgaagagttaaaacatgac
tttgatactctagttgaattatgggactcaatatttaaggcttatcataaaatcaaaaag
cctgctctacttcataaagagagtgacataatcgtcagaacagttagagatcatctaaaa
gaagatgttaaagaaattattgtagattctaaagaatgctatgaagatgttaaaagacaa
cttggcttacttagacaaagttttgatattaacaaagttaagttatacaacgaagagtta
cctatatttgcacagtttggtatcgatcaacaaatagaaaatgcctataagagagaaatt
agattaccttctggtggctctattgtaattgacacaacagaagccttggttgctattgat
gttaactcatctcgtgctaacaaagctgaagatgttgaaactactgctttcaaaacaaac
ttagaagctgctgaagaagttgctcgccaacttagaatcagagatcttggtggtctagtt
atcgttgattttattgacatgtcattctatccaaatagaaagcaagtcgaagaaaaatta
atggaagctctgcagcaagataaagcacgcattcaaatgtcacgcatatctaaacttgga
cttgttgaaatatctagacaacgcttaagctcatcaatcaatgaaagtgtaatgcaaaag
tgccctcgttgtgacggacacggtttcataaaaacaactcaagctactgcacttactatt
ttacgtaaaattagagcagaggctatcaaagaagatactaatgagatacgtgttcaggtc
cctgttgatatagctgcatatatactaaatgagaaaagagatagcattgttgaaattgaa
agaatctctgaagttaaagtcatgttaattcccaacttcaacatggagtctcctaagttt
caaatgcaaagaatttggggtactagctacaaatcaaaccgtacaagttctgacttaata
gaagatgtatacaacgttgaaattcctaaagcgggtaaaaagaaagttgctgctgttgaa
ctaagtaaacctatatctgaagatcagagcgtaagccctaaggaagataataaacttgaa
aacaagaatattgaaactactgttcaaaacaacacaaacaaaactagtgaaaagcaagag
ccaaagaaaaaagggtttttcagtaaactactagataagcttacaggtagtaatgaagtt
attgctgttgagaataagaaacctcaaaataaacaatacaacaataaagataaggctcaa
aaacctcaaaagtctcaagataacagaccgcaaaaagacattaatcaacgtgacaatcgc
aaagctaataatgatcgcagtgataataaaaataataataaagatcaaaaacctcaagtc
caaaagtctcaagacaacagacaagaaagagacaataaccagcgtaacgatcgtaaaaac
aatgacaataggaatgatcgtaacaaaaataaattaagtagtgataagtttgataaaaaa
tcaaacaatcgtggtagtagcagaagcaacaacctaaatcttaataatgctgaagaggtt
gttgatattactcagcttaagtatcaaaatcaaactgctgaaaaaactgacaatatcaag
aaagtaatatctaaaaatcctgaagagtttgtctctgttatggttaaagatgttttagaa
aactataacagcttaaaagatgatggtgctacaaaagtagctactgaagaaaaagcaaag
actagtaaatatctaaaatttgatactgttttagtcgataaagaaataactcttcttaaa
gaagctgctagacaagctgaaaaggctaaacaagccgagaaaatccaaaacactgaagta
gaggatagcaacaatattcatgcagagataaaagaaactattgaaatagttgatgaagta
gttgtaaaagaagagcaatctaaaaaagctaaactagaaaaagatgataaaacatctgaa
caaaatagcgtaaaaaaagaaaagcctaaaactactaaaaataataaaaaagaaaaaaca
gttgaaaaagctaacaaacaaaatcaacctgagccagaatacataaattattctccagct
cttgattttgaatcacaatcaataatctaa
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