Francisella philomiragia O#319-036: LA56_837
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Entry
LA56_837 CDS
T03618
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
fpm
Francisella philomiragia O#319-036
Pathway
fpm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LA56_837 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpm03400
]
LA56_837 (recB)
Enzymes [BR:
fpm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LA56_837 (recB)
DNA repair and recombination proteins [BR:
fpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LA56_837 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AJI54810
LinkDB
All DBs
Position
complement(843303..846860)
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AA seq
1185 aa
AA seq
DB search
MTNLDANTITLQGRHIIEASAGTGKTFNITTLYIRLLLEKKLLPKDILVMTFTKDATQEI
IGRVEAKIRDVLADHKSCKEVLSDEDYKHIKRALLEVDEAAIFTIHGFCKKVLSEQAFAS
GMEMDVSMEVDTSDILQKVVEDFFRKHINKNKTNFEYLQAYKLHTPEKFLDNLRNVVRSS
YELLTKQAISLDEFKILKKQQLELFLNNHDIVDDFLSKLGKGEPQGKRVDEYHRILEWLK
LDNQTLFPDDISIITDGRKISAKLIKPIFIGVKELRDLQEEIKRANSAQFIKQACLQIRQ
DFAKAKEQKGVLDFDDLITKLCQSVKQSPDLVKTLQHQYPVALIDEFQDTDAEQYEILDT
IYPQSNKLLHSPLERGADRRGVVSVTDSPSSQRGIDDLLLLMIGDPKQAIYGFRGGDIFT
YLKAKDSCSNDNQWSMDTNWRSTSEMIKAYNRLFYKQDYLSEEEGQIGANIFSDGIGYQL
VKASPKANEKAKDFDDNLKPINYFYYQVAEDDNKSDIDSNLSAWTANEIVRLLNSKKVVE
SDIAILVENGKQAKVIQKALQAKKLSSVYLSQRDNVYHSQEATEILALMEGINDLENKSM
LKRALSTSLLGGRADKFISYIDENDVSAWDEEIEKAKSLRQQWHKYGFMAFIMQVIHQNF
TQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLNSTATSEGELRLESDDNL
IKIITIHGSKGLEYSVVFIPFASYVSSKKFQVGDFSKYYDKNIKQTVYKIGKDDSIKPQI
ENEVIEELMRLFYVAVTRAEHRCYIGVAKYSNSEKSPLARFLDYQKDDDWLEKIQIITNN
PVNQSSLIDVATSHCNESENLITNDQFDHDTLQNLKANDINKLANDNWEMLSFSKISKSK
AQNTALEKEPDESEDDSAQKSQQELEFRFTAPKGADIGNILHNVLEHTDFSLGKIDDNLL
QEQMDRYKVVAAEDFDKLKVWLEECLVASIPSIETADFSSNDIQYGLFDIKDKGFCLKDI
SNTKTLKEAEFYFPITNEKLYKKNIIKILAEYRNQTIDYDEFASQKIFGMLHGFIDLIFE
YDGKFYVADYKSNYLGSTLEDYNQAAMSEKNQSSFYDLQYLIYSVALDKYLRQNIESYNY
EKHFGGVYYFYLRGMKDGYGVYRARPTLEIINKIANLFNGDDYHV
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgactaatctagatgcaaacacaataactttacaaggtcgccatattatcgaggctagt
gctggtactggtaagacttttaatattactactttgtatattaggttattacttgaaaaa
aagctattacccaaagatatccttgtaatgacctttaccaaagatgctacccaagagatt
atcggtagagtggaagctaagattagagatgtgttagcagatcataaaagttgtaaagaa
gttttatccgatgaagactataaacatatcaaaagagcgttattagaagttgatgaagca
gctatatttactattcatgggttttgtaaaaaagtcctaagtgagcaagcatttgctagt
ggtatggagatggatgtctctatggaggtcgatacttcagatattttgcaaaaagtagta
gaggatttttttagaaaacatatcaataaaaataaaacaaactttgaatatttacaagca
tataagctacatactccagagaagtttttggataatctaaggaatgttgttaggtctagt
tatgaactattaacaaagcaagctataagcttagatgaatttaaaatacttaaaaagcaa
cagctggaattatttttaaataatcatgatatcgtagatgactttttatctaaattagga
aaaggcgagccacagggcaagagagttgatgaataccatagaattttagaatggttgaaa
ttagataatcaaacactattcccagatgatatatctataattacagatggcagaaagata
agtgcaaaactaataaaaccgatttttattggtgtaaaagaattaagagacttacaggaa
gaaataaagagagcaaattcagcgcaatttatcaaacaagcttgcctgcaaatccgccaa
gattttgcaaaagcaaaagagcaaaaaggtgttttagactttgatgatttgattactaaa
ctttgtcaaagtgttaaacagtcaccagatttagtcaagactttgcaacatcaatatcca
gttgctcttattgatgagtttcaagatactgatgctgagcagtatgagattttggatact
atttatcctcaaagtaataagctactccattcccctcttgagaggggtgccgataggcgg
ggtgtggtgtctgtgactgattccccttcgtcccaaaggggaatagatgatttgttattg
ctaatgataggcgatccaaagcaagcaatttatggttttagaggaggagatatcttcaca
tatctaaaggctaaagatagttgctctaatgacaatcagtggagcatggatactaactgg
cgctcaactagtgagatgataaaggcttacaatagacttttttataaacaagactatttg
tcagaagaagagggtcaaattggagctaatatctttagtgatggtattggctatcagctt
gttaaagcatcaccaaaggcaaatgagaaagcaaaagactttgatgataaccttaagcca
ataaattatttctattatcaagtggcagaagatgataataaaagtgatatcgatagtaat
ttatcagcatggactgcaaatgaaattgtcagattattaaattctaaaaaagttgtagaa
agtgatatcgcaattttggtagagaatggtaagcaagcaaaggttattcaaaaagctcta
caagctaagaaactaagctcggtatatctaagtcagcgcgataatgtctatcatagccaa
gaggctacagagatattagctcttatggaaggtataaacgatcttgaaaataaatctatg
ttaaaaagagcgttatcaactagtttacttggtggcagagctgataaatttattagttat
attgatgaaaatgatgtctcagcatgggatgaagagatagaaaaagcaaaatctctaaga
caacaatggcataaatatggttttatggcatttattatgcaagttatacatcagaatttt
actcaaagatcggattcaaaagaacgtgttatcacaaatattctccatttagctgagctt
ataaaagtagctgagaataaatataaacacccaaatcagctaatcaaatggtatcgccaa
cagctaaatagtacagctacaagtgagggcgaacttcgattagagagtgatgataatctg
attaagataattacaattcacggttcaaaagggcttgagtactcagttgtatttatacca
tttgcaagttatgtaagctcaaagaaatttcaagttggtgatttctctaaatactatgat
aaaaatattaaacagacagtctataaaattggtaaagatgacagtataaaaccacaaata
gaaaatgaagttatagaagaattaatgcgcctgttttatgtggctgttacacgtgcagag
catagatgttatattggagttgcaaaatatagtaatagcgaaaaatcaccattagcaaga
ttcttagattatcaaaaagatgatgactggttagagaaaatccaaataatcacgaataat
cccgttaatcaaagttcgcttatagatgtagctacaagtcattgtaatgaaagtgagaat
ttaattacaaatgaccaatttgaccatgatactttacaaaacctcaaagcgaatgatatt
aataagttagcaaatgataattgggagatgctgtctttctcaaaaatatccaagtcaaaa
gctcaaaatactgcattagaaaaagaacctgatgagtctgaagatgatagtgctcaaaaa
tctcagcaggaattagagtttagatttacagctcccaaaggagcagatatcggtaatatt
ttgcataatgttttagagcatacggattttagcctaggcaagatagatgataatctttta
caagagcaaatggatagatataaagtagttgctgcagaagattttgataagcttaaagta
tggttagaagagtgtttagtcgcgtctataccttctatagaaactgcagattttagttct
aatgatattcaatacggtttgtttgatatcaaggataaaggcttttgcttaaaagacatc
tctaatacaaaaaccttaaaagaagcagagttttattttcctataacaaatgaaaaacta
tataagaaaaatattatcaaaattttagcagaatatcgtaatcaaactattgattatgat
gaatttgcaagtcaaaagatttttggtatgcttcatggttttattgatttgatttttgaa
tatgatggtaaattttatgtggcagattataagtcaaattatcttgggagtactctagaa
gattataatcaagctgctatgagtgagaaaaatcaaagtagcttttatgatttgcagtat
ctaatatatagcgttgccttggataagtacctgcgacaaaacattgaaagttataattat
gaaaagcattttggtggagtatattatttctatcttagaggtatgaaagatggttatggg
gtttatcgagcgagaccaactttagagattattaacaaaattgctaatctatttaatgga
gatgactatcatgtataa
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