Fictibacillus phosphorivorans: ABE65_007810
Help
Entry
ABE65_007810 CDS
T04282
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fpn
Fictibacillus phosphorivorans
Pathway
fpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE65_007810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpn03019
]
ABE65_007810
Messenger RNA biogenesis [BR:
fpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABE65_007810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ANC76710
UniProt:
A0A160IM32
LinkDB
All DBs
Position
complement(1517569..1519239)
Genome browser
AA seq
556 aa
AA seq
DB search
MKFVKNHQAAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNEEKIKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALALIKNKLEEHGLLRRAQLH
EITEDDVIKFRKTSVSFFRTTHSIPDSYGLVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVPGFTLSERRVGESIQDIFRKMEGRVIFATFASNIHRLQQ
VVEASVANNRKIAVFGRSMDSAITVGQELGFIKAPKNTFVDANQINRLPDNQVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNALSVSKTINQLFRAGAEVIHGSL
NDIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEYRMLKMHTKLASDCDVPTQNSFVMDNGE
VLALSSNEAMVAGKIPSGSVYVDGSGIGDIGNIVLRDRKILSEEGLVVVVVSMDMKEFKI
EAGPDIISRGFVYMRESGDLIHDAQSLLSKHLETIMNEKRTTQWSEIKNEITDTLAPFLY
EKTKRRPMILPIIMEI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatcatcaagccgccgttttcgcgcttggcggtctaggagaaatc
ggtaagaacacgtatgccgtccaatttcaagatgagatcatccttattgatgcaggtatt
aaattccctgaagatgaacttttaggaattgattacgtcattcccgattatacgtatctt
gtaaagaatgaagaaaagatcaagggcttgtttatcacacatggtcacgaggatcatatc
ggcggtatcccttatctactaagacaagttaacattccgatttatggtggcaaactcgca
cttgctctcatcaagaacaaattagaagaacacggattgcttcgtcgagcacagttgcat
gaaattactgaggacgatgtgatcaaattccgtaaaacatctgtaagtttctttagaact
actcacagtattccagattcttacggacttgtagtaaaaacgccaccaggaaatatcgtt
catacaggcgattttaaattcgatttcacgcctgttggtgaacctgcgaacttaacaaag
atggctgagatcggaaaagaaggcgtgctctgcttattatctgattcaacaaacagtgaa
gttcctggctttactctttctgagagacgtgtcggagaaagcatccaagacatctttaga
aaaatggaaggtcgagtgatcttcgctactttcgcttcgaacatccacagattgcagcaa
gtcgttgaagcgtctgttgcaaacaatagaaaaatcgctgtatttggccgtagtatggat
tcagcgattacagtgggacaagagctcggttttattaaagcaccgaaaaatacgtttgtt
gatgcaaaccagattaaccgtctccctgataaccaagttacgattctatgtacaggtagc
caaggtgaacccatggctgctctatcaagaattgctaacggaacacatagacagattcaa
atcattcctggagatactgttgtattctcatcctcacctattccaggaaatgcattaagt
gtaagtaagacgatcaaccagttgttccgtgcaggagcagaagttattcacggatcttta
aacgatatccatacttctggtcatggtggacaacaagaacaaaagcttatgctacgtctt
atgaaacctaagttctttatgccgattcatggtgaatatcgtatgcttaagatgcacacg
aagcttgcttctgattgtgatgttcctactcagaattcatttgtaatggataatggtgaa
gtattagctctatcttctaacgaggcgatggtagctgggaaaattccttctggttccgtc
tatgtagatggaagtggaattggggatatcggaaacatcgtacttcgagatcgtaaaatc
ctctctgaagagggtcttgtagtcgttgtcgttagtatggacatgaaagagttcaaaatt
gaagccggaccagatatcatctctcgaggttttgtatatatgcgagagtctggagatttg
attcacgatgctcaaagtcttcttagcaaacatttagaaacgatcatgaacgaaaaaaga
accactcagtggtctgaaatcaagaacgagattacagacacattggcgccattcttgtat
gaaaagacgaagagacgtccaatgattctacctattatcatggaaatttag
DBGET
integrated database retrieval system