Fictibacillus phosphorivorans: ABE65_008930
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Entry
ABE65_008930 CDS
T04282
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fpn
Fictibacillus phosphorivorans
Pathway
fpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE65_008930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpn03019
]
ABE65_008930
Messenger RNA biogenesis [BR:
fpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABE65_008930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
FV_peptidase
P8
Motif
Other DBs
NCBI-ProteinID:
ANC76920
UniProt:
A0A160IMI9
LinkDB
All DBs
Position
1737947..1739614
Genome browser
AA seq
555 aa
AA seq
DB search
MSKQNRDKIKVFALGGVGEIGKNMYVVDTGEEIFVMDSGLMFPQEEMLGIDIVIPDVTYL
KENLERVTGIFLTHAHEDHIGGLPYVLRQVPVPVYGTRLTLGLVEAKLKEAGLLRSTELN
LIETNQKLSFNSAKVSFFHVNHSIPDAVGIAIHTSQGIIANTGDFKIDHTPIDGQHTEFG
KISALAEEGVLCLLSDSTNAERPGSTGPEAQVGQEILDVFQAAKGRIIIASFASNVHRVQ
QVMNAAAKTNRKVAVNGRSMVKVVDIASQLGYLTIEKDLLVTIDQANDYSDEKVVILTTG
SQGESMAALSRMAQKSHKQIALRPSDTVVIAATPIPGNETSVAKMVDKLMRTGADVIFGQ
KKVHVSGHGSAEELKFMLSMMKPKYFMPVHGEYKMQKAHQKLAIEVGVEKDNIFIVDKGE
VVEFANGFAQKTGKVPSGNVLVDGLGVGDIGNIVLRDRKLLSQDGILVVVVTISKDSHKL
ISGPEIISRGFVYVRESEALLQEANTKVRDVLEKCMNENMKEWSSLKSNVRDTLSQYLFE
KTKRRPMIMPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaacaaaatagagataaaattaaagtttttgccctgggcggagtcggtgagatc
ggcaaaaacatgtatgtcgtggacacaggtgaagaaatctttgtcatggactcaggtctg
atgtttcctcaagaggaaatgcttggaatcgatatcgtcataccagatgtgacttacttg
aaggaaaacctagagcgtgtgactggaatcttcttaacacatgcccatgaagatcatatc
ggcggacttccatatgttttaagacaggtacctgtgcctgtatatggaactcgtttaacg
ttaggacttgtagaagcaaaactaaaagaagcgggactattgcgttccacagaattaaat
ttgatcgaaacgaaccaaaagctatcatttaacagtgcgaaggtaagcttcttccacgta
aatcacagtattccagatgcagtaggaattgcaattcacacgtcacagggaattattgca
aatactggtgattttaagatcgatcatacaccaatcgatggacagcatactgaatttgga
aaaatttcagcattggctgaagaaggtgtactgtgtttgctatcagatagtacgaacgca
gaacgaccaggctctacaggtccagaagcacaagttggacaagagatccttgatgttttc
caagcggcaaaaggaagaattatcatagcttcttttgcttcaaatgtacaccgtgttcag
caagttatgaacgctgctgcaaaaacaaacagaaaagtagctgttaacggaagaagtatg
gtgaaagttgttgatatcgcttcacaacttgggtacttgacgatcgaaaaagatctatta
gtaacgatcgatcaagcaaacgattacagtgatgaaaaagtagtcatcttaacaacaggt
agccaaggtgaatcgatggcagcgttgtctagaatggcacaaaaatcacacaaacagatc
gctcttcgtccttcagatacagtcgtaattgccgctaccccgatacctggcaatgaaact
tcagttgcgaagatggttgataaactgatgcgtacaggggcagatgttatctttggtcag
aaaaaggtccacgtatccggacatggtagtgctgaagaacttaagttcatgcttagtatg
atgaaaccgaaatacttcatgccagttcatggtgaatataagatgcaaaaagcgcatcaa
aaattggcgatcgaagttggagttgaaaaagacaacatctttatcgtggataaaggtgaa
gtggtagagttcgctaacggattcgctcaaaaaacaggtaaagtaccttcaggaaacgta
ttagtagatggtcttggagtaggagatattggaaacatcgtacttcgtgatcgtaaacta
ttatctcaagatggaattttagtggtcgttgttacgatcagtaaagattctcataagctg
atttcaggtcctgagatcatatcaagaggctttgtgtacgttcgtgaaagtgaagctctt
cttcaagaagcaaatacaaaagttcgtgacgtacttgaaaagtgcatgaacgaaaatatg
aaagaatggtctagtcttaagtcaaacgttagagatacattaagtcagtatctgttcgaa
aaaacgaagagaagaccaatgatcatgccgatcattatggaaatttaa
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