Fictibacillus phosphorivorans: ABE65_017130
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Entry
ABE65_017130 CDS
T04282
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fpn
Fictibacillus phosphorivorans
Pathway
fpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE65_017130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpn03019
]
ABE65_017130
03016 Transfer RNA biogenesis [BR:
fpn03016
]
ABE65_017130
Enzymes [BR:
fpn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABE65_017130
Messenger RNA biogenesis [BR:
fpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABE65_017130
Transfer RNA biogenesis [BR:
fpn03016
]
Prokaryotic type
tRNA degradation factors
ABE65_017130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1_RRP5
OB_Dis3
S1CSD-TOTE-2
OB_HELZ2
RNase_II_C_S1
CCDC32
Motif
Other DBs
NCBI-ProteinID:
ANC79446
UniProt:
A0A160ISG6
LinkDB
All DBs
Position
complement(3337917..3340208)
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AA seq
763 aa
AA seq
DB search
MKESEKPMTVTEIEEALQLPDAEAFKKLVLTLNELEDEGSVVRTRTNRYGLPEKMSLIKG
RVQGHAKGFAFLIPEESEQKDVYISQSDMNGAMSGDTVLVRLNQTSSGSRPEGTIIRILE
RGVTEVVGTFQESRKFGFVVADDKRIPNDIFIPADGVNGAVEGHKVLVKITKYPEGRNSA
EGEIIHIIGHKYDPGVDIISVIFKHGLPREFPVEALEQAHNTPDEIDPKDIEGRRDLRNE
TIVTIDGADAKDLDDAVHVIKLPNGHYKLGVHIADVTHYVTEDSPIDKEAQERGTSVYLV
DRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINHDGEVIKHEIFPSVIKTTERMTYTDV
RKILQDEDEAVNKKYESLIPFFKLMGELAEILRKKRFARGAIDFDFSEAKVLVDENSDPQ
DVVLRERSVAEKLIEEFMLCANETVAQHFHELELPFMYRIHEDPDEGKLERFLEFIGMFG
YALKGTASDIHPRSLQQLLETVKGEPEEMVISKIMLRSMKQAKYDHMSLGHYGLATEFYT
HFTSPIRRYPDLIVHRLIRMYLFKKDTGPKTVSHWKAELPGIAKHSSAMERRAVDAERET
DELKKSQFMLDKIGEEFDGVISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRFDEKFMAM
IGERTGNVFRIGDEISIRVANVNVDERAIDFEIVGMKGTPRKRFKDRQKVIDIGDTPKRG
RGRRSKNRTSESERSSGPQDSKKGKKKPFYKPVAKKKGKKKKK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcggaaaaaccgatgacagtaacagagattgaagaagctcttcaacttcct
gacgctgaagctttcaagaaactggttttaacacttaacgaattagaagatgaaggatca
gtcgttcgaacacgtacgaaccgttatggattacctgaaaagatgagcctgattaaaggc
cgcgttcaagggcatgcgaaaggctttgcattccttatcccggaagagtctgaacaaaaa
gatgtgtacatctcacaatctgatatgaatggtgcgatgagcggagacacggttcttgtg
cgcctcaaccaaacatcgtcaggatcacgtccagaaggtacgatcattcgtattttagaa
cgaggcgttacagaggtcgtcggaacgttccaggaaagccgtaaattcggttttgttgtg
gctgatgataaacggatcccgaatgatatctttattcctgcagacggcgttaacggcgct
gtagaaggacataaggtactagtgaagatcacaaaatatcctgagggtagaaacagtgct
gaaggagagatcattcacatcatcgggcataagtacgatccaggtgtagatattatctct
gttatcttcaaacatggactgccaagagagtttcctgttgaagcacttgagcaagctcat
aatacgccagatgagatcgacccgaaagatattgaaggacgtcgtgatcttcgtaacgaa
accattgtaacgattgatggagcggacgcgaaagacttggatgatgcggttcatgttatc
aagctgccaaacggccattataagcttggcgtacatatcgcagatgttacgcactatgta
actgaagattctccaatcgataaagaagcgcaagagcgtggtacgagtgtgtacttagtc
gatcgtgtaatcccgatgattccacatcgtctatcaaacggaatctgttcattgaacccg
aaagttgatcgcttaacgatttcatgtgagatggagatcaaccacgatggagaagtcatt
aaacacgaaatcttcccgagtgtgatcaaaacaacagagcgaatgacttatacagatgtt
cgtaaaatcttacaggatgaagacgaagcggttaacaagaaatacgagtcactcatccct
ttctttaagttaatgggagagcttgcagaaattcttcgcaaaaaacgttttgcacgcggg
gcgattgacttcgatttctctgaagcaaaagtactcgtagacgaaaacagcgacccacaa
gatgttgttcttcgcgagagatcggttgcagaaaaactgattgaagaatttatgctatgt
gccaacgaaaccgttgcacagcatttccatgaactcgaacttcctttcatgtaccgaatt
catgaagaccctgatgagggcaaattagaacgtttcttagagttcatcggtatgtttggt
tatgcgttaaaagggactgcaagcgatattcacccgcgcagcctgcaacagcttttggag
acggtaaaaggcgagcctgaggaaatggtaattagcaaaatcatgcttcgttccatgaag
caagcgaagtacgatcatatgtcacttggtcactatggcttggcgactgaattctacacg
catttcacgtcaccgatccgccgttatccagacttgatcgtacatcgcctcatccgtatg
tatctgtttaaaaaagacacaggaccaaaaacagtcagtcattggaaagcagaacttcct
gggatcgctaagcattcatcagcaatggaacgccgtgctgttgatgcggaacgtgaaaca
gatgagcttaaaaaatcacagttcatgcttgataagataggcgaagagtttgacggcgtg
atcagctctgtaacgaactttggattgttcgttgaacttccaaacacgattgaaggactc
gtacacgttagctacctaacagacgactactatcgattcgatgagaagtttatggcgatg
atcggtgagcgaacaggtaacgttttccgaatcggtgatgagatttccattcgagttgcg
aacgtaaatgtagatgagcgcgcgatcgattttgaaatcgtcggaatgaaaggaacacct
cgtaaacgctttaaagatcgccaaaaagtcatcgatattggagatacaccaaaacgcgga
cgaggaagaagaagcaagaaccgcacaagtgaatcagagcgttccagcggacctcaagat
tcaaagaaagggaagaagaagcctttctataaaccagtagctaagaaaaaaggcaagaaa
aagaagaaataa
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