Fusarium poae: FPOAC1_004786
Help
Entry
FPOAC1_004786 CDS
T09519
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fpoa
Fusarium poae
Pathway
fpoa03013
Nucleocytoplasmic transport
fpoa03015
mRNA surveillance pathway
fpoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fpoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FPOAC1_004786 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
FPOAC1_004786 (SUB2)
03015 mRNA surveillance pathway
FPOAC1_004786 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpoa03019
]
FPOAC1_004786 (SUB2)
03041 Spliceosome [BR:
fpoa03041
]
FPOAC1_004786 (SUB2)
Enzymes [BR:
fpoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPOAC1_004786 (SUB2)
Messenger RNA biogenesis [BR:
fpoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FPOAC1_004786 (SUB2)
Spliceosome [BR:
fpoa03041
]
Complex C
Other components
EJC/TREX
FPOAC1_004786 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FPOAC1_004786 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
68339789
NCBI-ProteinID:
XP_044708035
LinkDB
All DBs
Position
2:complement(<2626199..>2628181)
Genome browser
AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETTATASNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKETCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgattactccgacgaggagatcggtggcaacgagacc
accgcgactgcctccaatggcaagaagggcgagctcgccgccggtaacaatgtcgacaag
aagggcagctacgtcggtatccattcgactggtttccgcgatttcctcctgaaggctgag
ttgcttcgcgccatcgccgactgcggtttcgagcatccatcggaggtccaacaaacctgt
atcccccaggcgctcctcggtggtgacattatctgccaggccaagtccggtctgggtaag
actgctgtctttgttcttgctacccttcagcaagtcgagcccgtgaacggagaggtctcc
gtggttgtcatgtgccatactcgtgagctggcctaccagatccgtgacgagtacaaccgc
ttcagcaagtacatgcctgacatcaagaccggtgtcttctatggtggtactcccatcaag
accgacatggagacgctcaagaacaaggagacatgccctcacatcattgttggtactcct
ggtcgtctcaaggctcttgtccgtgacaaggctctgcgtcttggcagtgttcgcatcttt
gttctcgatgagtgtgacaagatgctcgatcagcctgacatgcgcactgatgtacaggac
gttttccgtgctactcctcagcagaagcaggttatgatgttctcagccaccctttccgag
gaagtcaagcctatctgccgaaagttcatgcagaaccctactgagcactacgtcgacgag
gacaccaagctcaccctccacggtcttcagcagtactacatcaagctagaagagaaggaa
aagaaccgcaagctcaatgagctcctagatgatctccaattcaaccaggtcatcatcttt
gtacgcagcaccgttcgtgctactgagcttgacaagcttctccgcgagtgcaacttccct
tcgatcgccgttcactctggtgtcagtcaggaagagcgtatccgtcgttacaaggagttc
aaggagttcaagaagagaatttgtgttgccactgacgttttcggacgaggtatcgacatt
gagcgtatcaacctggcgatcaactacgatctgtccaacgatgctagctcttacctgcac
cgtgtgggtcgtgctggacgattcggtaccaagggtttggccatctcgtttgtcagtacc
gatcaagaccaggaggttcttaaggagattgagaagcgatttgaggtcgctctgcctgaa
ttccccaaggagggcgtcgacgccagcacttacatggcttcctaa
DBGET
integrated database retrieval system
