Fusobacterium polymorphum: ERS445057_00986
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Entry
ERS445057_00986 CDS
T08899
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fpol
Fusobacterium polymorphum
Pathway
fpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS445057_00986 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpol03019
]
ERS445057_00986 (rnjA)
Messenger RNA biogenesis [BR:
fpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERS445057_00986 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
PDEase_II
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
CKG86212
LinkDB
All DBs
Position
1:991080..992975
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AA seq
631 aa
AA seq
DB search
MKKEKQGKQTQVKENKISIHDKIMSIKDDVQNLKTKKTKKKVEKKVIEKIKKQKEEVKKT
EVIQKNTKKIKVSKKDLDKMYVIPLGGLEEVGKNCTIIQYKDEIIIVDAGAIFPDENLPG
IDLVIPDYTFLENNKSKVKGLFVTHGHEDHIGGIPYLYEKIEKDTVIYGGKLTNALIKSK
FENFGVKKALPKMVEVGSRSKVSVGKYFTVEFVKVTHSIADSYCLSVKTPAGHVFLTGDF
KIDLTPVDNEKVDFMRLSELGEEGVDLMLSDSTNSEVEGFTPSERSVGDAFRQEFQKATG
RIVVAVFASHVHRIQQIIDTAAQFKRKIAIDGRSLLKVFEIAPSVGRLNIPQNLLIPISS
VDKYDDDEIVILCTGTQGEPLAALSRIAKNMHKHIALREGDTVIISSTPIPGNEKAVSTN
INNILKYDVDLVFKKIAGIHVSGHGSKEEQKLMLNLINPKHFMPVHGEYRMLKAHMRSAI
ETGVPKDKILLTQNGDKVEVTKEYAKINGKVNSGEILVDGLGVGDIGSKVIKDRQQLSED
GIVIVAYSIDKETGKIVSGPEMSTKGFVYYKDSEDTIKEAQDLLAKKINKNETYLGRDWA
DLKGNVRDLLSRFFYEKLKRNPIILPMLLEI
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagagaaacaggggaaacaaacacaagtgaaggagaacaaaattagtattcat
gacaaaataatgagtataaaggatgatgttcaaaatttaaaaactaagaaaacaaaaaag
aaagtagaaaaaaaagtaatagaaaaaataaaaaaacaaaaagaagaagttaaaaagact
gaggtaattcaaaaaaatactaaaaaaattaaagtttcaaaaaaagatttagataagatg
tatgttattccattaggtggtttagaagaagttggaaaaaactgtactataattcaatat
aaagatgaaataattattgtagatgcaggagcaatatttccagatgaaaatttacctggt
atagacttagtaattccagattatacttttttagaaaataataagtctaaagtgaaggga
ttatttgtaactcatggacatgaagatcatataggaggaattccttatttatatgaaaaa
atagaaaaggatactgtaatctatggtggaaaattaacaaatgccttaataaaatctaaa
tttgaaaattttggagtgaagaaagctttaccaaaaatggttgaagttggttcaagaagc
aaagtgagtgttggaaaatattttacagttgaatttgtaaaagtaacacactcaatagcc
gattcatattgtttatctgtaaaaacaccagcaggacatgtattcttaacgggagatttt
aaaatagatttaactcctgttgataatgaaaaagtagattttatgagattatcagaatta
ggtgaagaaggtgtagacttaatgttatcagattctactaactctgaagttgaaggcttt
actccatctgaaagaagtgttggagatgcttttagacaggagtttcaaaaagctactgga
agaatagttgtagcagtatttgcctcacatgttcatagaatacaacaaattatagataca
gcagcacaatttaaaagaaaaattgctattgatggaagaagtttactaaaggtatttgag
atagcacctagtgttggaagattaaatatacctcaaaacttacttattccaatatcatca
gttgacaaatatgatgatgatgaaattgtaatattatgtacaggtacacagggagagcct
ctagcagctctttcaagaatagctaaaaatatgcataaacatatagctttaagagaagga
gatactgtaataatttcatctactcctataccagggaatgaaaaagcagtttcaacaaat
ataaataatattttaaaatatgatgttgatttagtttttaagaagattgcaggtatccat
gtatcaggacatggtagtaaagaagaacaaaagttaatgttaaatctaataaatccaaaa
cattttatgccagttcatggtgaatatagaatgctaaaagcacatatgaggtcagctatt
gaaacaggagtaccaaaagataaaattcttttaactcaaaatggtgataaagttgaagtt
acaaaagaatatgcaaaaataaatggtaaagtaaattctggtgaaattctagttgatggt
ttaggtgttggagatattggaagtaaggttataaaagatagacaacaattatcagaggat
ggaatagttatagttgcatattctattgataaggaaacaggaaaaatagtttcaggtcct
gaaatgtcaacaaaaggttttgtatattataaagattcagaagatactataaaagaggca
caggatttattagcaaaaaaaattaataaaaatgaaacttatttaggtagagattgggca
gatttaaaaggaaatgtaagagatttattatcaagatttttctatgaaaaattaaaaaga
aatcctataattttacctatgttattagaaatataa
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