Frischella perrara: FPB0191_02020
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Entry
FPB0191_02020 CDS
T03525
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpp
Frischella perrara
Pathway
fpp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPB0191_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpp03021
]
FPB0191_02020
03400 DNA repair and recombination proteins [BR:
fpp03400
]
FPB0191_02020
Enzymes [BR:
fpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPB0191_02020
Transcription machinery [BR:
fpp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPB0191_02020
DNA repair and recombination proteins [BR:
fpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPB0191_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJA45831
UniProt:
A0A0A7S920
LinkDB
All DBs
Position
complement(2313438..2317655)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESFMILDGGMTNLERGQILTEEQYLDALEEFGDEFDARM
GAEAIQELLRNLDLNAECELLRDELSTTNSETKRKKLTKRIKILEAFIQSENKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLERRGYATTIKAAKKMVEREDAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQIEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMLLTGPKEAEKLYRLG
EAELHARVKVRIVEHQRNSAGEWEATTSLVDTTIGRAILWLIMPKGLPFSVVNQPLGKKA
ISKILNICYRQLGMKETVILADQVMYTGFAYAARSGVSVGIDDMEIPTKKAEIIREAEIE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMIDNLSTEKVINREGQEETQSSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGVVMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGSADILIPRNTLLDESFCDLLEAESIDSVKVRSVVSCNTDFGVCAKCYG
RDLARGHIVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSVQVKNNGNVKL
SNAKFVINPEKKLVITSRNAELTVVDELGRMKETYKVPYGAILTKGNGSTVKAGETVANW
DPHTMPVVSEVQGFVKFVDMIDGQSITRQTDELTGLSSIVVLDVAERTSLGKDLRPAIKI
VDKQDNEVFVSGSEMPAQYFLPGKALVQLEDGAEINIGDVLARIPQASVGTKDITGGLPR
VADLFEARKPKEPAILAEVDGVISFGKETKGKRRLVISPADGSEPYEEMIPKWRQLNVFE
GEHVQRGDVISDGPESPHDILRLRGVNAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIINPGNSTLLEGEQLEVSRIKIINRELEAQGKEPATYLHDLLGITKASLTTESFI
SAASFQETTRVLTEAAVAGKNDELRGLKENVIVGRLIPAGTGYAYHKERLRKRSLVIDSS
EVESTITAEEATANLAELLNSTDEI
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaaagcgcagacaaaaactgaagagtttgatgctatt
aaaattggattagcctcaccagatatgattcgttcatggtcatttggtgaagttaaaaaa
ccagaaaccattaattatcgtacctttaaaccggagcgtgatggtttattctgtgccaga
atttttggtccagtaaaagattatgaatgtttgtgtggtaaatacaaacgtttaaaacac
cgcggtgtaatctgtgaaaaatgtggtgttgaagttactcaagctaaagtacgtcgtgaa
cgtatggggcatattgaattagcttcaccaactgcacatatttggtttctgaaatcacta
ccatctcgtattggtttattgttagatatgccattacgcgacatcgaacgtgtactttat
ttcgaatcatttatgatattagatggtggtatgaccaatcttgaaagaggtcaaatatta
actgaagagcagtaccttgatgcgcttgaagaattcggtgatgaatttgatgcacgtatg
ggggcagaggcaattcaagagctattacgtaatttagatttgaatgctgaatgtgaatta
ttacgtgatgagttatcgactaccaattctgaaactaaacgcaagaaattaacgaagcgt
attaaaattttagaagcatttatccaatcggaaaataaaccagagtggatgattctaaat
gtattacctgttttaccacctgatttacgtccattagtaccgttagatggtggtcgattt
gcgacttcagatttaaatgatttatatcgtcgagttattaaccgtaataatcgtttaaaa
cgtttactagatctagctgcaccagatattatcgtacgtaacgaaaaacgtatgttacaa
gaatctgttgatgcattattagataatggtcgtcgtggtcgtgcgattaccggttcaaac
aaacgtccattaaaatcacttgctgatatgattaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaaacgtgttgactactctggtcgttctgttattactgtgggtccttac
ctacgattacatcaatgtggtttacctaagaagatggctcttgaattattcaaaccattc
atttatggtaaattagagcgacgtggttatgcaacgaccattaaagctgcgaagaaaatg
gtagaacgtgaagatgctattgtttgggatattttagatgaagtaatccgcgaacatccg
gtattattaaaccgtgcacctactcttcaccgtttaggtatccaagcctttgaaccgatc
ctgatcgaaggtaaagctattcagttgcatccattagtttgtgcggcattcaatgctgac
ttcgatggtgaccaaatggctgtacacgtgccattaacacttgaagcccaaattgaagca
cgtgcgttaatgatgtcaactaataatatcttatcacctgcgagtggtgagccgattatt
gttccatctcaagacgttgtattgggtctttactatatgacgcgtgataaagtaaatgct
aaaggtgaaggtatgttattaaccggaccaaaagaagcagaaaaactttatcgtttgggg
gaagcagaacttcatgcacgtgttaaagttcgcatagttgaacatcaacgtaatagtgct
ggtgaatgggaagcaaccacatcattagttgatacaacgattggacgagcgattttatgg
ttaattatgccaaaaggtttaccattctctgttgtaaatcaaccgttaggtaaaaaagca
atttctaagatattgaatatttgctatcgtcagttaggcatgaaagagactgttatatta
gccgatcaggtgatgtatacaggtttcgcgtatgcagcgcgttctggggtatctgtcggt
atagacgatatggaaatcccaaccaaaaaagctgagattatccgcgaggcggaaattgaa
gtggctgaaattcaagagcagttccaatctggtctagttacggctggtgaacgttacaat
aaagttatcgatatttgggcagctgctaatgagcgagttgcgaaagcgatgatcgataac
ttatcaactgagaaagtcattaatagagaaggtcaagaagaaacacaatcttcattcaat
agtatctatatgatggctgactcaggtgctcgtggttcggcagcacagatacgtcagtta
gcaggtatgcgtggtttgatggcaaaaccagatggttcaatcatcgaaacaccaattact
gcaaacttccgtgaaggattaaacgttcttcaatactttatttctacgcatggtgcgcgt
aaaggtcttgccgataccgcattaaaaacagcgaactctggttatttaactcgtcgttta
gttgatgtagcccaagatctggttgttattgaagatgattgtggtacacacgaaggcgta
gtaatgacaccagttattgaaggtggtgatgttaaagaaccattacgggaacgtgtactt
ggtcgtgtaacagcagaagatgtattaaaaccaggttctgcggatattcttatccctcgt
aatacattattagatgaaagcttctgtgatttacttgaagcagaatcaattgatagcgtg
aaagtacgctcagttgtatcttgtaatactgatttcggtgtttgtgcaaaatgttatggt
cgtgatcttgcacgaggtcatattgttaataaaggtgaagctattggtgttattgcagca
caatcaatcggtgagccaggaacacagttaacaatgcgtacgttccatatcggtggtgca
gcatctcgtgcggcagctgaatctagcgtacaggtgaaaaataacggtaacgttaaatta
agtaatgctaaattcgttattaacccagaaaagaaattggttattacttcacgtaatgcg
gaattgacggttgtagacgaattaggtcgtatgaaggaaacttataaagttccttatggt
gcgattttaactaaaggtaatggtagtacagtaaaagcgggtgaaacagtagctaactgg
gatccacataccatgcctgttgtttctgaagtacaaggcttcgtgaaattcgttgacatg
attgatggacaatctatcacacgtcagaccgatgaattaacgggtctatcttcaattgta
gtgcttgatgttgcggaaagaacatcacttggtaaagacttacgcccagcaattaagatt
gttgataaacaagataacgaagtatttgtttctggttcagaaatgcctgcacaatacttc
ttaccaggtaaggcgttagttcaattagaagatggtgctgaaattaatattggtgatgta
ttagcgcgtattcctcaagcatctgttggtactaaagatattaccggtggtttaccacga
gttgctgatctatttgaagcacgtaaacctaaagaacctgctattttagcagaagttgat
ggtgtgatttcatttggtaaagaaaccaaaggtaaacgtcgtctggtgatttcacctgct
gatggtagtgagccatatgaagagatgattcctaaatggcgtcaacttaatgtgtttgaa
ggtgaacatgttcaacgaggtgatgttatttctgatggacctgaatcaccgcatgatatt
ttacgtttacgtggtgttaatgccgtaacacgttatattgtcaatgaggttcaggaagtt
taccgtttacaaggcgttaagattaacgataagcatattgaagttatcgttcgtcaaatg
ttacgtaaagcgactattatcaacccaggtaattcaactttacttgaaggcgaacaactt
gaggtgtcacgcattaaaattattaatcgtgagcttgaggcacaaggtaaagagccagcg
acttacttacatgatctattaggtatcactaaagcgtcgttaacaactgagtcatttatc
tcggctgcatcattccaagaaacaacccgtgtgttaacggaagcagcagtagccggtaaa
aatgatgaattgcgtggacttaaagagaacgttattgttggtcgacttattcctgcggga
acaggttatgcttaccataaagagcgtttacgtaaacgttctctggtcattgattctagt
gaagttgaatcaactatcacagcggaagaagcgacggcaaatctggcggaattattaaat
tcaaccgatgaaatataa
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