Frischella perrara: FPB0191_02208
Help
Entry
FPB0191_02208 CDS
T03525
Name
(GenBank) tRNA-splicing ligase, RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fpp
Frischella perrara
Brite
KEGG Orthology (KO) [BR:
fpp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fpp03016
]
FPB0191_02208
Enzymes [BR:
fpp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FPB0191_02208
Transfer RNA biogenesis [BR:
fpp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FPB0191_02208
Prokaryotic type
tRNA splicing ligases
FPB0191_02208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJA46012
UniProt:
A0A0A7S594
LinkDB
All DBs
Position
2531526..2532752
Genome browser
AA seq
408 aa
AA seq
DB search
MIQYEVIKNENSRPVKMWTKGVPVEQGAKEQLLKTAQLPFIFKHIAVMPDVHVGKGSTIG
SVIPTLGAVIPAAVGVDIGCGMMAVQTSLTANDLPDDLAPLRLAIEKNVPHGLTPKKEGQ
DQGSWQHAPAIVDQYWQQLLPGFEKLTEKYPCFLKTNNYNHLGTLGTGNHFIEVCLDENQ
QVWIMLHSGSRGVGNAIGEFFIKLAKKDMETYFIDKYLPDNDLAYFVEGTEHFDDYLMAV
NWAQEFARLNREIMMHNTIMAIRNILNIEFTSHIQAVNCHHNYVQKEHHFGQNVFVTRKG
AVSARKGELGIIPGSMGAKSYIVRGLGNEESFCSCSHGAGRVMSRSAAKKMFTIEDQIKA
TAHVECRKDANVIDEIPMAYKDIDAVMTAQSELVEIMHQLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatatgaagtaataaaaaatgaaaattcaagacctgtaaaaatgtggactaaa
ggcgtgccagtagagcaaggtgccaaagaacaattactaaaaacagcacaattgccattt
attttcaaacatattgctgttatgcctgatgtccatgtgggtaaaggatcaacaatcggg
agtgttattcctactctgggtgccgttattccggcagccgttggggtggatattggttgt
ggaatgatggccgtgcaaacatcacttactgctaatgatttacctgatgatctagcccct
ttacgtttagcgattgaaaaaaacgtgccacatggtttaacacctaaaaaggaaggtcaa
gatcagggaagttggcaacatgcaccagcaattgttgatcaatattggcaacaactttta
ccaggatttgagaagttaaccgaaaaatatccgtgttttttaaaaacaaataattacaac
catttagggacacttggaaccggtaatcactttatcgaagtgtgtttagatgaaaatcaa
caagtatggattatgttacatagtggttcacgtggggttggtaatgctatcggtgaattc
tttattaaattagccaaaaaagatatggaaacttactttatcgataaatatttaccagat
aatgatttagcttactttgttgaagggactgaacattttgatgattatcttatggcggta
aattgggcgcaagagtttgctcgtttaaatcgtgaaattatgatgcataacactattatg
gctattagaaatatattaaatattgaatttaccagtcatatacaagcggtaaattgtcat
cataactatgtgcaaaaagagcatcattttgggcaaaatgtgtttgtgacgcgtaaaggg
gcggtttcggcacgcaaaggagaacttggtattattcctggttcaatgggagcaaaaagc
tacattgttcgcggactagggaatgaagaaagtttctgctcttgttctcatggtgcggga
cgagtgatgagccgatctgcagccaaaaaaatgttcaccattgaagaccaaataaaagcc
actgcgcacgtcgaatgtcgtaaagatgccaatgtgatcgacgaaattccaatggcttat
aaagatattgatgcggtaatgacagctcaaagtgaattggttgaaattatgcatcaatta
cggcaagtggtgtgtgtgaaagggtaa
DBGET
integrated database retrieval system
