Flavobacterium psychrophilum 950106-1/1: IB65_06200
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Entry
IB65_06200 CDS
T03412
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fpq
Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IB65_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpq03021
]
IB65_06200
03400 DNA repair and recombination proteins [BR:
fpq03400
]
IB65_06200
Enzymes [BR:
fpq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IB65_06200
Transcription machinery [BR:
fpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IB65_06200
DNA repair and recombination proteins [BR:
fpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IB65_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
H_lectin
Motif
Other DBs
NCBI-ProteinID:
AIT65475
UniProt:
A0A076NVZ7
LinkDB
All DBs
Position
complement(1361635..1362627)
Genome browser
AA seq
330 aa
AA seq
DB search
MALFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSIRIE
GVDHEFSTIPGVVEDVTEIILSLKQVRFKRQIEDIDNESVTIAISGKNQITAGDFQKYIS
GFQVLNPELVICNLDSKVNFNMEMTIEKGRGYVPAEENKKQNAAIGTIFTDSIFTPVKNV
KYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEADEI
AQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELDELVAIKNLTFGMDLAKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcattatttaattttcagaagcccgataaagttatcatgatcgattcaaccgatttt
gaaggtaagtttgaattcagacctttagaacctggttacggattaacagttggtaacgca
cttagaagagttttactttctgctttagaaggttacgcaatcacatctatccgtatagaa
ggtgtagatcacgaattctcaactattcctggagttgttgaagatgttacagaaattatt
cttagtcttaaacaagtgcgtttcaaacgtcaaatagaagacatagataacgaatctgtt
accattgcaatctcaggaaaaaatcaaattactgctggtgatttccaaaaatatatttct
ggttttcaagtattaaacccagaattggtgatttgtaacttggacagtaaagtgaacttt
aacatggaaatgactatcgaaaaaggtagaggatatgttccagctgaagaaaacaaaaaa
caaaatgctgcaattggtactatttttaccgattctatctttacaccagtaaagaatgtg
aaatatgcaattgaaaacttccgtgtagagcaaaaaacagattacgaaaaattagttttt
gaaataaaaactgacggatctattaatccaaaagatgcccttactgaagctgcaaaagta
ttaattcaccatttcatgttgttctctgacgaaagaattacacttgaagctgatgaaata
gcccaaacagaatcttatgacgaagagtcattacatatgagacaactgcttaaaactaag
cttgtagatatggatctttctgtaagagcattaaattgcttaaaagcagctgaagttgat
acattaggtgacttagtatcattcaacaaaaatgacttaatgaaattccgtaattttggt
aaaaaatctttaacagaactagacgaactagtagctattaaaaatttaaccttcggaatg
gatttagcaaaatacaaactagataaagaataa
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