Flavobacterium psychrophilum 950106-1/1: IB65_09045
Help
Entry
IB65_09045 CDS
T03412
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpq
Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB65_09045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpq03019
]
IB65_09045
03009 Ribosome biogenesis [BR:
fpq03009
]
IB65_09045
Enzymes [BR:
fpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IB65_09045
Messenger RNA biogenesis [BR:
fpq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IB65_09045
Ribosome biogenesis [BR:
fpq03009
]
Prokaryotic type
rRNA helicases
IB65_09045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIT65996
LinkDB
All DBs
Position
complement(1945772..1947706)
Genome browser
AA seq
644 aa
AA seq
DB search
MNKFEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFP
VIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNT
WLFSATMPAEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKISSIERI
IKQKFEEKVIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINSVLEDLSKEELIKKM
VSVEFNRFIAYYKKNRDIANQSSGSDRRERDDRDGAPRENNNNGATRYFVNIGSRDDFDW
MQLKDFLKETLDLGRDDVFKVDVKEGFSFFNTDAEHTDKVMQVLNGFDLNGRRINVEISK
NDGGSSSGRRDHNGRSGGGRSSGGGGFRGERSAAPRSGGGAFGPRSSAPREGGFSRGSAP
REGGFGRNESSDRAPRNERRSGSGFTPRGASESSSERPKRPRRS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaacaattaggattgacagaatcgctactacgtgcgattatcgatcta
ggatttgagaatccgaccgaagtacaagagaaagcgattccgatgctattggaaaaagac
attgatttagttgcgttggctcagacagggacagggaaaacagcagcttttggttttcca
gtcattcaaaaaattgatgccaacaatagaaatacacaggcgttaattttatcacctact
cgcgaactatgtttgcagattacaaacgaacttaaaaactactcgaaatacgaaaaaggt
atcaatgtagtagcggtttacggaggtgcaagtatcacagaacaagcaagagacatcaaa
agaggagcacaaattattgtagcaactccaggaagaatgcaagacatgattaacagaagg
ttagttgatatttctcaaataaactactgtattcttgatgaggcagacgaaatgttaaac
atgggtttctacgaagacatcgtaaatatcctatctacaacgccagacgagaaaaacact
tggttattctctgctacaatgcctgctgaagtagctagaattggaaaacaattcatgacc
gatccaatagaaattactgtgggagctaaaaactcaggttctgcaacagtttctcacgaa
tattacttagtaaatgcacgtgatcgttacgaagctttaaaacgtttagccgatgctaat
ccagacattttctcagtagttttttgtagaacaaaacgtgatacacaagctgtggctgaa
aaattggtcgaagatggatatagtgctgctgctttgcacggagatttatctcaagcacaa
cgtgatggagttatgaaagctttccgtggtcgtcaaatacaaatgcttgtagctactgat
gtggctgctcgtggaatcgatgttgataatgttacacacgttgtaaattaccaattgcca
gacgaaatagaaacctacaatcaccgttctggtcgtacaggacgtgcaggaaaactagga
acttctattgttattgtaactaaaagtgaaattcgcaaaatttcttctatcgaaagaatt
atcaaacaaaagtttgaagaaaaagtaattccttctggaatagaaatctgcgaaatacaa
ttattacacttagcaaacaaaattaaagatacagaagttgatcacgaaattgacaactat
ttaccagctataaatagcgttctcgaagatttatctaaagaagagctaattaagaaaatg
gtatctgtagaatttaaccgttttattgcttactacaagaaaaatagagatatagccaac
caatcttcaggttcagacagacgtgagcgtgatgatagagatggtgctccaagagaaaat
aacaacaatggcgcaactcgttattttgtaaatattggttctagagacgatttcgattgg
atgcaattaaaagacttcttaaaagaaacattagatttaggtcgtgatgatgtatttaaa
gtagatgtaaaagaagggttctctttctttaataccgatgcagaacatactgataaagta
atgcaagttttgaacggattcgaccttaacggacgaagaataaacgttgaaatttctaaa
aatgacggtggttcaagttctggtcgtcgtgatcataacggaagatctggtggtggaaga
agttctggtggtggcggttttagaggcgaaagaagtgcagcaccaagatctggtggtggt
gcttttggcccaagaagttcagcaccaagagaaggcggattcagcagaggatcagcacca
agagaaggtggttttggaagaaacgaatcttcagatagagcgccaagaaacgaaagacgt
tcagggtcaggttttacaccacgtggtgcttcagaatcaagttccgaaagacctaaaaga
ccaagaagaagttaa
DBGET
integrated database retrieval system
