Faecalibacterium duncaniae A2165: CG447_07675
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Entry
CG447_07675 CDS
T06780
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpra
Faecalibacterium duncaniae A2165
Pathway
fpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CG447_07675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpra03400
]
CG447_07675 (mfd)
Enzymes [BR:
fpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CG447_07675 (mfd)
DNA repair and recombination proteins [BR:
fpra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CG447_07675 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
UB2H
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ATO99789
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All DBs
Position
1519595..1523062
Genome browser
AA seq
1155 aa
AA seq
DB search
MYEALLKSTAEYQKIAESLHTPGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEA
THFADDLKALGLTAAVFPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVCVPAEAL
LQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYA
PDMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREVLFGSTAETAEALRGAI
KKARGKKRTAMEKATEADLAQLDSGLMPEAMDKYYGIRYPQPATLLDHLDSPIFVLDEVG
GIRDAQKATEYRRGEELTGLLEEGVLCPGLDVLYQTMDDLAIAAQKQSTLLCENFLRGMN
EFKLKDLINVEAFAAPNWGGDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKG
YSVSMSRDVRPAKGIVQVLPGHLTAGCTFPFAHAAVISSRRHGLDEEAAAENKRRKKNKN
ALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDVLYVPVTQLDLL
SRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYARRRQAQGYAFPPDGD
WQNDFETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMG
GKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGLQSGSVDIVV
GTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPIPRTLNMAMS
GIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAH
VSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDA
DRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLSAIREFTAFGSGFRIAMR
DLQIRGAGSLLGHSQHGHMEAVGYDLYVKMLGQAIARAKGEPVQRDKSECLIDLRVDAYI
PEKYIADGPGRIEAYKRIAAIQTPEDAADVLDELIDRYGDPPPSVSDLVNVSLARVQATA
VGVYEVTQKKDTLVLQVEQLDLRMIQGLLVAFNGRVVTGAGAKPYLSVTLQKEEKPLELL
QSILKAMAEILAQKS
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaagcgctgctgaaaagcacagcggaatatcagaagatcgcggagagcctgcac
accccgggcccggcggcgctgttcggcctgccgcctgcgggccgtgccctgctgtacgcc
gccctgcaaaaggaccttgaccgggtgctgtgcatcgtgacccccggcgaggccgaggct
acccactttgcagacgacctcaaggcgctgggcctgaccgcggcggtgttcccgccccgg
gacttcatgctgcggccagtggagggcgcgggccgtgagtacgagtaccgccgcctgtcg
gtgctgggcgcgctggcgggcgggcggctgaacgccgtctgcgtgcccgccgaggcgctg
ctgcaatacacggtgccccgggatgagttcctgcggaacactctcaccctcaagcccggc
atggtctacaaccgggaagcgctggtggcgcggctgttcgccgccgggtacgtccggcgc
agtcaggtggacggcccgggccagttcagcgtgcgcggcgatatcgtggacatctacgcg
ccggacatgcaccagcccgcccgtgtggaatactgggacgatgagattgattcgctggcc
tccttcgacctgctgacccagcgccgggacggcagtctggaaaagatctacctttccccc
gcccgcgaggtgctgttcggcagcaccgccgagacggccgaggctctgcgcggagccatc
aaaaaggcgcggggcaaaaagcgtaccgccatggaaaaggccacagaggccgaccttgcc
cagctggattccggcctgatgcccgaagccatggacaagtattacggcatccgctacccg
cagcccgccaccctgctggaccatctggacagccccatctttgtactggacgaggtgggc
ggcatccgggatgcccagaaggccaccgagtaccgccggggcgaggagctgaccggcctg
ctggaggagggcgtgctctgccccgggctggacgtgctctaccagaccatggacgacctt
gccattgcggcccagaaacagagcaccctgctgtgtgagaacttcctgcgggggatgaac
gaattcaagctgaaggacctcatcaacgtggaggcctttgcggcccccaactggggcggc
gacctggcctccctgcgggaggatcttgacccgctgatcgcccagggctatgccgtcacc
cttttctccggcacccccaagggtgccgccgccctgacccgggacctgacggacaagggc
tactccgtgagcatgagccgggacgtgcgcccggccaagggcatcgtgcaggtgctgccc
ggccacctgaccgcaggctgcaccttcccctttgcccacgcggcggtcatctcctcccgg
cggcacgggctggacgaggaagccgccgccgagaacaaaaggcgcaaaaagaacaaaaac
gccctgtccagcctttcggacatcaagcccggggactatgtggtgcaccagagccacggc
atcggcatgtacgcgggcatccagcggctggaagtgcagggtgccatcaaggattacctg
aagatccagtattccggctccgatgtactctatgtgcccgtcacccagctggatctgctc
agccgctacaccgcccccggcgacgaggaaaaggtgaagctggccaagctgggcggtgcc
gaatggcagcgcacccgcgccaaggtgaaaaaggccgccgaagagatggcacaggaactc
attgagctgtacgcccggcgcaggcaggcccagggatacgccttcccgcccgacggcgac
tggcagaacgatttcgagacccgctttgagtacgatgagaccgacgaccagctccacgcc
accgccgagatcaagcaggacatggaaaagccctacccgatggaccgcctgctctgcggc
gatgtgggcgtgggcaagaccgaagtcgccctgcgcgcggccttcaagtgcgtgatgggc
ggcaagcagtgcgcccttctggcccccaccaccctgctggcctggcagcactacaacacc
ctgctctcccggatggaggccttcccggtgaagatcgggatgctctcccgcttccgtacc
gcgaaacagcaaaaggagaccctgcggggcctgcagtccggcagcgtggacatcgtggtg
ggcacccaccgcctgctctccaaggatgtgcgcttccacgacctgggccttgtcatcatc
gatgaggagcagcggttcggcgtgaagcacaaggagaagctgaaggagaacttcatcggc
gtggatatgctgaccctctcggccacgcccatcccccgcaccctgaacatggccatgagc
ggcatccgcgacctgtccaccatcgagcagccgcccattgagcgccagcccgtggagacc
tttgtgctggagtacaacgatgtcatccttgccgaagccatgaaaaaggagctggcccgg
ggcggtcaggtgtactacctgcacaaccgggtggacaacatcgagtccaccgccgcccat
gtcagccagctggttcccggcgcccgggtgggcattgcccacggcaagatgaccgaggag
gagctgaacccggtctggcagcatctgctcaacggcgagatcgacattctggtctgcacc
accctgatcgaaacgggcatcgatgtgcgcaactgcaacacccttatcattgaggatgcc
gaccggatgggccttgcccagctgtaccagatccggggccgggtgggccgctccggccgc
aaggcctacgcctacttcaccttccggcgggacaagaccctgaccgacatcgcccagaag
cggctttccgccatccgggagttcacggccttcggctccggcttccgcatcgccatgcgc
gatctccagatccgcggcgcgggcagtctgctgggccacagccagcacggccacatggag
gctgtgggctacgacctctatgtaaagatgctggggcaggccatcgcccgggccaagggc
gagccggtgcagcgcgacaagagcgagtgcctgatcgacctgcgggtggatgcctacatc
cccgaaaagtacattgccgacgggccgggccgcattgaagcctacaagcggatcgccgcc
atccagacccccgaggatgccgccgatgtgctggacgagctcatcgaccgctacggcgac
ccgccgccctcggtcagcgatctggtcaatgtctcgctggcgcgggtgcaggccaccgct
gtgggcgtgtacgaggtgacccagaagaaggacactctggtgctgcaggtggagcagctg
gacctccggatgatccagggcctgctggtggccttcaacggccgcgttgtcaccggggcc
ggtgcaaaaccctacctctccgtcaccctgcaaaaagaggaaaagccgctggagctgctg
cagagcatcctgaaagccatggcggagatcttggcacaaaagtcgtaa
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