Flavobacterium psychrophilum JIP02/86: FP0868
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Entry
FP0868 CDS
T00548
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fps
Flavobacterium psychrophilum JIP02/86
Pathway
fps03420
Nucleotide excision repair
fps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FP0868 (uvrD)
03430 Mismatch repair
FP0868 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fps03400
]
FP0868 (uvrD)
Enzymes [BR:
fps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FP0868 (uvrD)
DNA repair and recombination proteins [BR:
fps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FP0868 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
FP0868 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CAL42968
UniProt:
A6GXZ5
LinkDB
All DBs
Position
1074158..1076491
Genome browser
AA seq
777 aa
AA seq
DB search
MQKYISQLNEAQQAPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFT
NKAAREMKKRIADIVGNAEAKNLWMGTFHSVFARILRSEADKLGYPSNFTIYDAQDSVRL
LGAIIKEMQLDKDIYKPKQVFSKISSYKNSLVTVKAYFNNPELQESDAMAKKPRLGEIYQ
QYVERCFKAGAMDFDDLLLKTNELLTRFPEVLLKYQDRFRYILVDEYQDTNHSQYLIVRA
LSDRFQNICVVGDDAQSIYGFRGANINNILNFQKDYENVKMFRLEQNYRSSKNIVEAANS
VIDKNKTKLDKVVWTANDFGQKIKVNRSVTDNDEGRFVAGEIWTQKMTNQMTNGQFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVINPKDEEALIRVINYP
ARGIGDTTIEKLTIAANHYKRSIFEVMQVIDKIDLKLNSGTKAKLQDFVTMIKSFQAINE
TQDAFYLADHVAKKTGYIQELKKDGTPEGIARIENIEELLNGIKDFTDGQVEVDGARGAL
SEFLEDVALATDLDKDTSDDDRVALMTIHLAKGLEFPTVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEINGEYLEYITPPETNY
RYKPQIDHDIFGDVDKSKLRLAKPITGTPPKYIANNEPKLDTNIRKLKPLSNNAGSSSPN
LFDNKLVAGNIVMHERFGKGEILNLEGVGADKKAEIKFEVGGIKKLLLRFAKLDVMG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatacatcagccaacttaacgaagcacaacaagcccctgttttacaaaaagac
ggaccaatgattgttattgctggagcaggctcaggaaaaacacgtgtacttacagtaaga
atagctaatttaatgagtcaaaatgttgatgcttttaatattcttgcactcacatttacc
aataaagcagcacgtgaaatgaaaaaacgtattgcagatattgtaggaaatgccgaagct
aaaaacctctggatgggaacttttcactccgtttttgctcgaattcttcgttcggaggca
gataaattgggttacccttcaaattttaccatttatgatgcacaagattccgtacgattg
ctaggagcgatcatcaaagaaatgcaattagacaaagatatttacaagccaaaacaagtc
tttagtaaaatatcatcttacaaaaatagtttagtcacggtaaaagcctattttaataat
ccagaattgcaagaatctgatgcgatggcaaaaaaaccccgcttgggcgaaatttatcag
caatatgtagaaaggtgttttaaagcaggtgccatggattttgatgatttgttgctaaaa
accaacgaattactcacacgattccctgaagttctcctgaaatatcaggatcgtttccga
tacattttagtcgatgagtaccaagatacaaaccactcacagtatttaattgttcgtgcc
ttgtccgatagatttcaaaatatttgtgtcgtgggcgacgatgcccaaagtatttatggt
tttcgtggagccaacattaacaatattttaaattttcaaaaagattacgaaaacgtaaaa
atgtttcgattggaacaaaattatcgttcgtcaaaaaatattgtcgaagcagcgaattct
gttatcgataaaaataaaacaaaactcgacaaagtcgtctggacagccaacgattttggt
caaaaaataaaagtaaaccgaagcgtaaccgacaatgatgaaggtcgttttgtagcagga
gaaatctggacacaaaaaatgaccaaccaaatgacaaacggtcagtttgctatcttgtat
cgtaccaatgcacaatctcgtgctatggaagacgctttaagaaaacgtgacattccttac
agaatttatggcggattatcattctatcagagaaaagaaataaaagatgttttgtgttat
ttgcggttggttattaatccaaaagacgaagaagcactcattcgtgttattaattatcca
gcacgaggaataggagatacgaccatcgaaaaactaaccattgcagccaatcattacaag
cgttcaatttttgaggtaatgcaagttattgataaaatcgatttaaaattaaattctgga
accaaagcaaaattacaagattttgtaacaatgataaaaagttttcaggctattaatgaa
actcaagatgctttttaccttgccgatcatgtagccaaaaaaacaggatatattcaagaa
ctcaaaaaagatggcacgccagagggtattgcccgaattgaaaatatagaagaattacta
aacggaattaaggattttacagatggccaagtagaagtagatggtgctcgtggtgcatta
tccgaatttttagaagatgtggcactagctaccgatctagacaaagacacctccgatgat
gatcgtgttgctctaatgaccattcaccttgcaaaaggtttagaatttcccacggttttt
gttgtaggtatggaagaagatttgtttccaagcgccatgagtatgagcaccagaagcgaa
ctcgaagaagaacgccgattgttttatgtagccttaacccgagcagaacaccaagcgtat
ttaacctacgcacaatctcgttaccgctggggaaaacttacagatagcgaaccatcacga
tttatcgaagaaataaatggcgaatatttagagtatatcacaccgcccgaaacaaattat
aggtacaaaccacaaatagatcatgatatttttggtgacgtagataaatcgaaattacga
ttagcaaaacctataacaggtacgccacccaaatatattgcaaacaacgaacccaaatta
gatacaaatattcgcaagctaaaacctctttcgaataacgcaggatctagcagccctaat
ttatttgacaacaaactcgttgcaggaaatatagtcatgcacgaacgtttcggaaaagga
gaaatcttaaacctagaaggcgttggtgccgacaaaaaagccgaaattaaatttgaagta
ggcggaattaaaaaattattgttgcgttttgcaaagttagatgtaatggggtaa
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integrated database retrieval system
