Flavobacterium psychrophilum JIP02/86: FP1053
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Entry
FP1053 CDS
T00548
Symbol
holA
Name
(GenBank) Probable DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
fps
Flavobacterium psychrophilum JIP02/86
Pathway
fps03030
DNA replication
fps03430
Mismatch repair
fps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FP1053 (holA)
03430 Mismatch repair
FP1053 (holA)
03440 Homologous recombination
FP1053 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fps03032
]
FP1053 (holA)
03400 DNA repair and recombination proteins [BR:
fps03400
]
FP1053 (holA)
Enzymes [BR:
fps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FP1053 (holA)
DNA replication proteins [BR:
fps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FP1053 (holA)
DNA repair and recombination proteins [BR:
fps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FP1053 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
UPF0113
Motif
Other DBs
NCBI-ProteinID:
CAL43147
UniProt:
A6GYH4
LinkDB
All DBs
Position
1139281..1140285
Genome browser
AA seq
334 aa
AA seq
DB search
MDEVLKIINDIKAGNIKPIYFLMGEEPYYIDKLSEYIEKNILQEHERDFNQTVLYGRDVT
IEDVVSNAKRYPMMADRQVVIVKEAQDLIRTIDKLESYAENPQPTTVLVICYKYKTLDKR
KKITKILAQKGVVYESKKLYENQVGEWLKRVLSGKKLNIEPKASAMLVDFLGTDLSKIAN
ELDKLAIILPQGSTITPAIIEENIGFSKDFNIFEFRKAIGERNQLKSYKIADHFAQNPKD
NPMVVTTSLVFSFFIQLLKYHGLKDKNPKTVAPILGVSPFFLKDYDIALRNYPMKKVSQI
VASLRDIDVKSKGVGANALPQSDLLKEMLVKIFN
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggtactaaaaataattaacgatataaaagctggaaatataaaacctatttat
tttttaatgggcgaagagccttattatattgataaattgtctgaatatatcgaaaaaaat
attctgcaagagcatgaaagagattttaatcagacggttttatatggtcgtgatgttacg
attgaagacgtagtttcgaatgcaaaacggtatccaatgatggcagatcgtcaggttgtc
attgtaaaagaagctcaggatttaattcgaacaatagataaattagaatcttatgccgaa
aaccctcagccaacaactgttttagttatttgttataagtataaaactttagacaaacgc
aagaaaataactaaaatattagctcaaaaaggggtggtttacgagagtaaaaaattatac
gaaaaccaagtaggtgagtggctaaagcgagttttgtcaggaaaaaaattaaatatagag
cctaaagcatctgccatgttggtcgattttctaggaaccgatttgagcaaaattgccaac
gaattggataaattagccattatattaccacaaggaagtactattacaccagctattatt
gaagaaaatataggttttagtaaagattttaatatatttgaatttagaaaagccattggc
gagagaaatcaattaaaatcatacaaaattgccgaccattttgcgcaaaacccaaaggat
aatcctatggttgttacgacaagtttggtttttagcttttttattcaattgctaaagtac
catgggctaaaagacaaaaacccaaaaacggtggctcctatattaggtgtaagccctttt
ttcttaaaggattatgatattgctttgcgcaattatcctatgaaaaaagtgagtcaaatt
gtggcttctttacgtgatattgatgtaaaaagtaaaggtgttggtgcaaatgctttgcct
caatctgatttgttgaaagaaatgttggttaagatttttaattaa
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