Flavobacterium psychrophilum Z2: AMR72_03485
Help
Entry
AMR72_03485 CDS
T04556
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMR72_03485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpsz03019
]
AMR72_03485
Enzymes [BR:
fpsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMR72_03485
Messenger RNA biogenesis [BR:
fpsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMR72_03485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
FACT-Spt16_Nlob
P-loop_SecA
CMS1
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
ALM48035
LinkDB
All DBs
Position
821582..822859
Genome browser
AA seq
425 aa
AA seq
DB search
MTFQDLKLLKNIQQALADEGYENPTPIQEQAIPIILEGTDLVGCAQTGTGKTAAFAIPIL
NSLHHIVGSAKKVKYIRTLVVTPTRELALQIGESFDTYGKYTNIRQLTIFGGVNQVSQTD
QLKKGVDILIATPGRLLDLHKQGFINLDHLHTLVLDEADQMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPVAIRELADSFLTKPKYVSVAPISSTAERVKQQIYFVDKGDKRKLLYHLI
RNENLDNVLVFTRTKHGADNVVKALKKNGVEAGAIHGDKSQGARQRVLDQFKNKEVGVLV
ATDIAARGIDIESLPYVINFDLPNIPETYVHRIGRTGRAGREGLSISFCSKDELPYLKDI
EKLIRLQIKVIDGHPYPYPEEVAPAPGEKKKPDLRNKNKNKPAGNGGNANSRKSEASKKN
KKRWY
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaggatcttaaattacttaaaaatatacaacaggcacttgcagacgaaggg
tatgaaaaccctaccccgatacaggaacaggccatccctattattttagaaggaaccgac
ctcgtaggctgcgcgcagacaggtacgggtaaaaccgctgcctttgccattcctatactt
aactcgctgcaccacattgtaggctcggctaaaaaagttaaatacatccgcacacttgta
gttacacctactcgtgaacttgctttacagataggcgaaagctttgacacatacggaaaa
tatacaaacattcgccagctaaccatttttggcggtgtaaaccaggtttcacaaacagat
cagcttaaaaaaggtgtagacattcttattgctacccctggaaggctgcttgacctccac
aaacagggattcatcaatctagatcatctgcacacacttgtacttgatgaggctgaccag
atgctggacatgggctttattaacgatgtaaagaaaattatcaaacttacacctgataac
aggcagacactattgttttctgctactatgcctgtagctatacgcgaactggcagatagt
ttccttaccaaaccaaaatacgtttctgtagcacctatatcgtcaacagcagaaagagtt
aaacagcaaatatacttcgtagataagggagacaagcgtaaactgctttaccaccttata
cgcaacgaaaaccttgataacgtgcttgtgtttacacgtacaaaacatggagcagacaat
gttgtaaaagcacttaagaaaaatggcgttgaagcaggtgctatccacggtgataaatcg
cagggagcaagacagcgtgtgttagaccagtttaaaaataaagaagtgggcgtacttgtt
gctaccgatatcgctgcccgtggtattgatattgaaagcctgccttacgttataaacttt
gaccttcctaatattcctgaaacctatgtacaccgtattggccgtaccggaagagcagga
agagaaggattatctatatcgttttgcagcaaagacgaacttccttacctaaaagatatc
gaaaagcttatccgtctccagataaaggttatcgacggtcacccttatccataccctgag
gaagttgctccggcaccgggtgaaaagaaaaaacccgatcttaggaataagaataaaaac
aagcctgccggaaacggaggaaacgctaactccagaaaatctgaagcttcgaaaaaaaat
aaaaaacgctggtattaa
DBGET
integrated database retrieval system
