Flavobacterium psychrophilum Z2: AMR72_04195
Help
Entry
AMR72_04195 CDS
T04556
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMR72_04195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpsz03019
]
AMR72_04195
03009 Ribosome biogenesis [BR:
fpsz03009
]
AMR72_04195
Enzymes [BR:
fpsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMR72_04195
Messenger RNA biogenesis [BR:
fpsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMR72_04195
Ribosome biogenesis [BR:
fpsz03009
]
Prokaryotic type
rRNA helicases
AMR72_04195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALM48166
LinkDB
All DBs
Position
987186..989063
Genome browser
AA seq
625 aa
AA seq
DB search
MNKFEQLGLNESLLKAIADLGFENPSEVQEKAIPLLLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDPENRNTQALILSPTRELCLQITNEIKLYSKYIKGINTVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVDVSKIDFCILDEADEMLNMGFYDDIVNILSTSPDDKST
WLFSATMPQEVARIAKEFMRKPLEITVGHKNSGSSTVSHEFYLVNARDRYEALKRLADSN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRNRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISAIERI
IQQKFQEKTIPSGMEICEIQLFHLANRIKDVEIDHEIDSYLPAIYEVMKDLTKEELIKKM
VSVEFNRFINYYKKNRDLSAQSAGDRADRGVSRGNDGATRYFINIGSRDNYDWMSLKDFL
RDTLGLGRDDVFKVDVKEGFSFFNTDAEHSEKVLDILNSFQMDGRRINVEISKNDGRDNN
GGRRDHNNRGGGGGFRGNSDRGGSSDRGGRGGERRGESSSFGGGRSGARSAGSGSGSGAG
SSRPPRRGDSNRDSSASRERRPRRS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaacaattaggattgaatgaatcgcttctgaaggcgatagccgatcta
ggatttgaaaatccgtcagaagtacaggagaaagcgattcccctattattggaaaaagac
acagatatagtagcgttagcccagacgggtacagggaaaaccgctgcttttggttttccg
cttatccaaaaaatagatcctgaaaacaggaacacacaggcgcttatcttatcgccgaca
cgtgagctttgcttacagattacaaacgaaattaagctttactctaagtacatcaaaggc
atcaacactgttgctgtgtatggtggagcaagcattacagaacaagcaagagacattaaa
cgtggtgcacaaattattgttgctacaccgggtaggatgcaggacatgattaaccgtgga
cttgtagatgtgtctaaaattgatttctgtattcttgatgaggcagatgaaatgcttaac
atgggattctatgatgatatcgtaaacatattatctacatctccagacgataagagcaca
tggttattctcagctactatgccgcaggaagttgcacgtatcgctaaagaattcatgaga
aagccgcttgaaattacagtaggccacaaaaactctggttcatctacggtatctcacgaa
ttttaccttgtaaatgcacgtgaccgttatgaagcacttaagcgtcttgctgactctaat
ccggacattttctcggttgtattttgccgtactaaaagagacactcaggcagttgccgaa
aaacttattgaagacggatacaacgcagcagcacttcacggtgacctttctcaggcacag
cgtgattctgtaatgaaatcgttccgtaataggcagatacaaatgcttgttgctacagac
gttgcagcaaggggtattgacgttgacaacattacacacgttgttaactatcagcttcct
gacgagattgaaacatacaaccaccgtagtggacgtacaggccgtgcaggtaaattaggt
acatctattgtaattatcactaaaagtgaattacgtaaaatatctgctattgaaaggatc
atccagcaaaaattccaggaaaaaacaattccttcaggaatggagatctgcgaaattcag
cttttccacttagcaaacagaattaaagacgttgaaattgaccacgaaatcgactcttac
cttcctgctatctatgaagtaatgaaagatcttacgaaagaagagcttatcaagaaaatg
gtatcagtagaatttaaccgtttcatcaactactacaagaaaaaccgtgacctttctgca
caatctgcaggagacagggcagacagaggtgtttcaagaggtaatgatggcgctacgcgt
tatttcattaatataggatcaagagacaattatgactggatgagccttaaggatttcctt
cgtgacactcttggacttggacgtgacgatgtgtttaaagtggatgtaaaagaaggtttc
tctttctttaatacagatgctgaacacagcgaaaaagtacttgacatattaaacagcttc
cagatggatggccgtagaattaatgttgagatctctaaaaacgacggaagagacaacaat
ggcggacgcagagaccacaacaacagaggcggcggtggcggctttagaggaaactctgac
cgtggcggaagctctgaccgtggtggaagaggcggcgaaagaagaggcgaatcatcatca
tttggtggtggaagaagcggtgcaagaagtgcaggttctggttcaggatcaggagcagga
agcagccgccctccaagaagaggcgactctaaccgtgattcttcagcttcaagagaaaga
agaccaagaagaagctaa
DBGET
integrated database retrieval system
