Flavobacterium psychrophilum Z2: AMR72_06380
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Entry
AMR72_06380 CDS
T04556
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMR72_06380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpsz03021
]
AMR72_06380
03400 DNA repair and recombination proteins [BR:
fpsz03400
]
AMR72_06380
Enzymes [BR:
fpsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMR72_06380
Transcription machinery [BR:
fpsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMR72_06380
DNA repair and recombination proteins [BR:
fpsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMR72_06380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ALM48556
LinkDB
All DBs
Position
complement(1466238..1470536)
Genome browser
AA seq
1432 aa
AA seq
DB search
MTRLKDKNTIKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQAGIAKGPDGENAKRLDFLTEEEYLNILDTLPQENQY
LDDTDPNKFIAKMGAECIMDLLARIDLDELSYQLRHNANTETSKQRKTEALKRLQVVESF
RESNFNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEK
KILGEGLTFYSAEEVNIALNEGRLELNARVRIRAKDFNENGELVYKIIQTTAGRVLFNEV
VPEAAGYINEILTKKSLRDIIGSILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSLGDI
IIPARKQELIADANEQVDAISVNYNMGLITNNERYNQVIDVWTSTNALLTELAMKNIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVSALKKNE
EIVESLGERILGRVALQDVINPLTSEVLVHAGTQITEAEVKAINAAPIERVEVRSPLTCE
ATKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEESS
IITKFRGRLEIEDLKTVKGENTEGEQVDIVVSRSTELKLVDENTGILLNTHNIPYGSSIF
VKDGDVVEQGTVICKWDPYNGVIISEFTGKIAYEDIEQGQSFMVEIDEQTGFQEKVISEA
RNKKLIPTLLIYGKDNELIRSYNLPVGAHLMVDNGEKIKAGKILVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEIKKYLVKLSNQILV
QENDYVKAGLPLSDGAITPEDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVRVQDPGDTLFLEDQLIHTSDFIVENDKLYGMKVVEDAGDSENLKAGQIITPREL
RDENSLLKRNDQNLVSARDVVPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDGLEGLKENVIVGHRIPAGTGMRDYDNTIVGSKEEYNELLTPKEEYNY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacgagattaaaagataaaaataccattaaaagattcaacaagatttccatcggactt
gcttcgccggaatctatccttgctgagtcaagaggtgaagttcttaagccggaaactatt
aactatcgtacccacaaaccagaaagagacggccttttctgtgagcgtatttttggtcct
gtaaaggattttgaatgtgcttgcggtaaatacaaaaggattcgttataaggggattgtt
tgtgaccgatgtggtgttgaagttactgaaaagaaagtacgtcgtgacagagtagggcac
atcaaccttgtagtgcctattgctcacatatggtatttccgttcgcttcctaataaaatt
ggttatatcctgggccttccttctaagaaattagacatgatcatatactatgaaagatat
gtggttattcaggctggtattgccaaaggaccggatggtgaaaatgctaaacgattagat
ttcttaactgaagaagagtaccttaatatccttgatacacttccgcaggaaaatcaatac
ttagacgatacagaccctaacaagtttatcgctaagatgggtgctgagtgtattatggat
ctgcttgcaaggattgaccttgatgagctttcgtaccagttacgccacaatgccaataca
gaaacgtctaaacagcgtaaaacagaagcccttaaaaggcttcaggttgtagaatcattc
cgtgaatctaacttcaacagggaaaaccgccctgagtggatgatccttaaggttatacct
gttataccgccggagcttcgcccattggtgccgcttgatggtggacgttttgcaacatca
gatttaaatgacctttaccgtagggtaattatccgtaacaaccgtcttaagaggttaatg
gaaattaaagcacctgaggtaattcttcgtaacgaaaagcgtatgctacaggaatctgta
gattcactattcgataacacaaggaaagcatctgctgttaaaacagaatctaacagacca
ttaaaatcactttctgattcattaaaaggtaaacaagggcgtttccgtcaaaacttactt
ggtaaacgtgttgactactctgcacgttcggtaattgttgttggacctgaaatgaaactt
tttgaatgtggtcttcctaaagacatggctgctgagctttacaaaccgtttgttatcagg
aaactgattgagcgtggaattgtaaaaacagttaagtctgctaaaaagataatagacaaa
aaagaacctgtagtttgggatatccttgaaaacgtaattaaaggtcacccggtattactt
aacagggctcctactcttcacagactaggtatacaggcattccagccaaaacttatcgaa
ggaaaagcgattcagcttcatccattggtatgtacggcgttcaatgccgattttgatggt
gaccagatggcagttcaccttccgctaggaccggaggctattcttgaggctcagttatta
atgcttgcttctcacaatatccttaaccctgctaacggtgcgccaatcacggtaccttct
caagacatggtacttggtctgtactacatgaccaaagaacgtctttctactccggagaag
aaaattttaggtgaaggccttactttctattctgcagaagaagtaaatattgcattaaac
gaaggccgtcttgaacttaatgcccgtgtgagaatacgtgctaaagatttcaacgaaaac
ggtgagttagtttataaaattatccagacaacagctggtagggtattattcaacgaggtt
gtgccggaagcggcaggatacatcaatgagatccttactaagaagtcgcttagggatatt
atcggttccattttaagtgttaccgacgttcctacaacggcagcgttccttgataatatg
aaagacatgggttataaattcgcatttagaggcggtctttcattcagtttaggagatatt
attatccctgcaagaaaacaggagcttattgccgatgcaaacgagcaggttgatgcgatt
tctgttaactataacatgggtcttattaccaataacgagcgttacaaccaggtaattgac
gtgtggacttctacgaatgcattgcttacagaacttgctatgaaaaacattagagaggat
cagcaaggattcaactcggtgtacatgatgcttgactctggagcgaggggttcaaaagaa
cagatccgtcagcttacaggtatgcgtggtttgatggcaaaacctaaaaaatcaaccgca
ggtggtggtgagattattgagaacccgattctttctaactttaaggaaggtctatcgatt
cttgaatacttcatttctactcacggtgcacgtaaaggtcttgcggatacggctcttaaa
acggcggatgctggttaccttacaaggaggctgcacgacgtttctcaggacgtaatcgta
aattctgttgactgtggtacgttaaggggtattgaagtatctgcccttaagaaaaacgaa
gagatcgttgaatctcttggtgagcgtatcttaggccgtgttgcacttcaggatgttatt
aacccacttacaagtgaggttcttgtacatgccggaacgcaaattacagaagctgaagtt
aaagctatcaatgcagcgccaatcgagagagtagaagtacgttctccattgacatgtgaa
gctactaaaggtatctgtgctaaatgttacggtcgtaaccttgctacaggaaaaatgacc
caaaggggtgaggctgttggtgtaattgccgcacagtcaattggtgagccgggtactcag
cttacacttcgtacattccacgttggtggtgttgcgggtggtatctctgaggaatcaagc
atcattactaaattccgtggtaggttagaaattgaagaccttaaaaccgttaaaggtgaa
aatactgaaggagaacaggttgatattgttgtatcacgttctactgagttaaaacttgtt
gacgagaatacaggcattcttttaaatacacacaatattccttacggttcaagcattttc
gttaaagacggggatgttgtagagcaaggaactgtaatatgtaaatgggacccttataat
ggggttatcatctctgagtttacgggtaaaattgcttatgaagatatcgaacagggacaa
tcgttcatggttgagatcgatgagcaaaccggattccaggagaaagttatctctgaggca
aggaacaagaaattaattcctaccttattgatatacggtaaagacaatgagcttatccgt
tcttacaacttaccggtgggtgcccaccttatggtagacaacggtgagaaaattaaggct
ggtaagatccttgttaaaataccaagacgttcatctaaagcgggcgatatcaccggaggt
cttccaaggattaccgagcttcttgaagcacgtaacccttctaaccctgctgtggtttct
gaaattgacggtgttgtttcattcggtaagatcaaaaggggtaaccgtgagatcgttatc
gagtctaaattcggagagatcaagaaatatttggttaaactttctaaccagatccttgtt
caggagaatgactacgttaaagcaggtcttccgttatcagatggtgctattactcctgag
gatatccttaggattcaaggcccatctgcagtacagcagtacttagtgaacgaaattcag
gaagtataccgtttacagggtgttaagatcaatgataagcactttgaggttgtaatccgt
caaatgatgcgtaaagtaagagttcaggatccgggagatacacttttccttgaagatcag
ctaatacatacgtctgactttatcgtggagaacgacaaactatatggaatgaaagttgtt
gaagacgcaggtgactctgaaaaccttaaagctggacagatcatcacgccacgtgagcta
agagatgaaaattcattacttaagcgtaacgaccaaaaccttgtatctgcaagagacgta
gttccggcaacggctactccggttcttcagggtattacaagagcgtcacttcaaactaaa
tcgttcatctctgcagcatcgttccaggaaactacgaaagtactgaatgaagcagctgta
gcaggtaaagttgacggacttgaaggacttaaagagaatgtaatcgttggtcacagaata
cctgcaggtacaggtatgagagattacgataacacgatcgtaggttctaaagaagaatac
aatgagctattaactcctaaggaggaatataactactaa
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integrated database retrieval system
