Flavobacterium psychrophilum Z2: AMR72_08000
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Entry
AMR72_08000 CDS
T04556
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03030
DNA replication
fpsz03430
Mismatch repair
fpsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMR72_08000
03430 Mismatch repair
AMR72_08000
03440 Homologous recombination
AMR72_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpsz03032
]
AMR72_08000
03400 DNA repair and recombination proteins [BR:
fpsz03400
]
AMR72_08000
Enzymes [BR:
fpsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMR72_08000
DNA replication proteins [BR:
fpsz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMR72_08000
DNA repair and recombination proteins [BR:
fpsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMR72_08000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
ALM48835
LinkDB
All DBs
Position
complement(1815715..1820220)
Genome browser
AA seq
1501 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDEMGRLVEHQDYMVRPDGFNIPY
DAERIHGISTDLAIEQGVDLAEVLEKFNIALSKSKFIVGQNVGFDVNIMGSEFYRMGVDS
PMASMKILDTCTEVTADLLKLPGGRGGRFKLPTLTELHQYLFGVPFGEAHNATADVEATT
RCFLELIKKQVFTPQELDVPSAYFQDFALANPEPIQLIGLKHINLKQASEEVRKRLEKLQ
SAQAVQQPQSPGVSLNIADVDFVHLHNHTQFSVLQSTISVPELVKAAARYKMPAVAMTDH
GNMMGAFHFVSNVLNHNKAAEAKNKAAVENGEQPTEVVMKPIVGVEFFVCEDHKDKTRKD
NGYQIVLMAKNKKGYHNLAKMSSIAYTAGFYYVPRIDKKVIEQYKEDIMVLSGNLYGEVP
NKILNIGENQAEEALLWWKNMFGDDFYIELMRHGQEDENRVNQTLISLARKNNVKLIATN
NTYYVDKENSHAHDILLCVKDGEKQATPIGRGRGFRYGLPNNEYYFKSGDEMKDLFKDIP
EAIANIQEIVDKVEIYSLYRDVLLPKFDIPEEFLVVEDEADGGKRGENKFLRDLTYKGAA
RRYPEITDDIRERLDFELKTIENSGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVA
YCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGASQVAQII
TYGTMAAKSSIRDTARVLDLPLFEADKIAKLIPNLKLAKIFNLDANALKAALRAEEYEKV
VELIALADGGDLTGETIQQAKVLEGSLRNTGIHACGVIITPDDITNFVPVSVAKDSDLYV
TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHNIDLDPESFPIDDVKTYELFQR
GETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYD
LDACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVE
QAAEKGHDPKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSN
NMNDIKQVTFFMEECKRMGLEVLGPDVNESFYKFTVNDRGAVRFGMGAIKGVGAGAVDTI
VVNRKDATYKSIFDLAKRIDLRAANKKAFENLALAGGFDCFTATHRAQYFHMDASENISF
LEKAVRYGNKFQENENSSQVSLFGEASEVQIPEPVVPPCEEWSTMEKLAKEKEVVGIYIS
GHPLDDYKFEMKYFCNARLEALKNLDQHVTKTLSFGGIISNVMHRVAKNGKGWASFMLEG
YDESYEFRIYGEEYLKFRHFLIGNNFTYMRVLVKEGWTNAEGKKGEPRLQFIAIQYLQDV
LTTFAKKLIIQFNIAELQEQVIATLNELFRANTGDNNVTFEVMELKKVIRQVEVAASAAP
PKEATDEVDEFDQEVVEPVMTDVEDIQVVTKLVMPSRRLKVKISNELLQELEKLQLNFKL
N
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgatatttgacactgaaacaaccggattacccaaacgctgggatgccccaatt
accgacactgataactggccgcgctgtatacagatagcatggcagctgcatgacgagatg
ggtagattggtagagcaccaggattatatggtaaggcccgatggctttaatattccgtat
gatgccgagcgtattcatggtatttctacagatcttgccatagagcagggtgtagatctt
gccgaggtattagagaagtttaatatagcactttctaaatctaaatttatagttgggcag
aacgtaggtttcgacgttaacatcatggggtctgagttttaccgcatgggtgtagacagc
cctatggcgtctatgaaaatactggatacctgtaccgaggttactgccgatttacttaag
ctgccgggtggtcgtggtggtcgatttaaacttccaacgctaaccgagctgcaccagtat
ttatttggagtgccattcggcgaagcccacaatgcaactgccgacgttgaggctacaaca
cgctgtttcctggagctgataaaaaagcaggtgtttacacctcaggagcttgatgtgcca
tcagcctattttcaggattttgctttagccaaccctgaacctattcagcttattggttta
aaacacataaatcttaagcaggcatcagaggaagttagaaaacgccttgagaaactgcaa
tctgcacaggcggtacagcagccacagtcgccgggtgtttcgcttaatattgccgatgta
gattttgtacacctgcacaaccatacacagttttcggtattacaatctaccatttcggtg
cccgaattggtaaaagctgctgccagatataaaatgccagctgtagccatgaccgatcac
ggtaatatgatgggggcgtttcattttgttagtaatgttttaaaccacaataaggctgcc
gaagcaaagaataaagctgctgtagaaaatggtgaacaacctacagaggttgttatgaag
cctatagttggggttgaattttttgtgtgcgaagaccacaaggacaaaacccgtaaagac
aacggttaccagatagtattgatggccaagaataaaaaaggctatcataatctggctaaa
atgtcgtctatagcctatactgccggattttattatgtaccgaggatcgacaaaaaagtt
atagagcagtacaaggaagatatcatggtactgtcgggtaacttatatggcgaggtgcct
aataaaatcctgaatattggtgaaaaccaggctgaagaagcattgttatggtggaaaaac
atgtttggcgatgatttctatatagaattaatgcgccacgggcaggaagatgaaaaccgt
gttaaccaaacgcttatatcgctggcccgtaaaaataatgttaagcttatagctactaat
aatacctattatgtagataaggagaactcgcatgcacacgatattttactgtgtgtaaaa
gacggtgaaaaacaggcaacgccaattggccgtggccgtggtttccgttacgggcttcca
aataacgaatactatttcaagtcgggcgatgagatgaaggatctttttaaagatataccc
gaggctattgctaacattcaggagatagttgacaaagttgaaatttattccctgtacagg
gatgtactgcttcctaaatttgatattccggaagagtttcttgttgttgaagatgaagcc
gatggtggtaaacgtggtgagaacaaattcctgagggatcttacctataaaggtgctgca
aggcgttaccctgaaattacagatgatattcgtgagcgtcttgattttgaattaaagacc
attgagaacagtggttacccgggatactttcttattgtacaggattttatcgccgaagcc
cgtaatatgggtgtttcggtagggccgggaaggggatcggctgcgggatctgcggtggcc
tactgtttaggaatcaccaatattgaccctattaagtacgacctcctttttgagcgtttc
cttaatcctgaccgtgtatcaatgcccgatattgatatcgactttgatgacgaggggcgt
gggcgtgttatggactacgttatcaataaatatggcgcaagccaggtagcgcagattatt
acctatggtaccatggcggcaaaatcgtctattcgtgacacagcaagggtgcttgacctg
ccattgtttgaagctgataaaattgctaagcttattcctaaccttaagcttgctaaaata
tttaacctcgatgccaatgcgcttaaagctgcattgcgcgccgaggaatacgaaaaagtt
gttgagcttattgcccttgccgatggcggcgaccttaccggtgaaaccatccagcaggca
aaagttctggaagggtcgttacgtaatacaggtatccacgcatgtggtgtaattattaca
cctgatgatattaccaatttcgttccggtatcggtcgcaaaagactccgacctttatgtt
acccagtttgataactcggtcgtagaaagtgccggattgcttaagatggacttcctgggt
ctgaagacccttacccttattaaagatacggttaagcttgtaaaatataagcacaatata
gatctcgaccctgagtcgttccctattgatgatgttaagacgtatgagctgttccagcgt
ggtgaaacggtaggggtgtttcagtacgaatcgcccggcatgcagaaatacatgaaggat
cttaagcctactgtatttgccgaccttattgccatgaatgccctttaccgtccggggcct
ttggagtatattccgagtttcgtacgaagaaaaaatggcgaggaagagattaagtatgac
cttgatgcctgcgaagaatacctaaaggagacctatggtattacggtataccaggagcag
gtaatgcttctgtcgcaaaagctggctggctttaccaaaggtgaggccgacgttttgcgt
aaagcgatgggtaaaaaacaaaaagacgtactggataagatgaagcctaagttcgtagaa
caggctgctgaaaaagggcatgaccctaaagtactcgaaaaaatatggaaagactgggag
gcctttgcaagttacgccttcaacaagtcgcactctacgtgttatgcatgggtggcttat
caaacggcttaccttaaggcacattatccggcagaatacatggcggcggtactttccaat
aacatgaacgatattaagcaggttaccttcttcatggaagaatgtaaacgtatgggactt
gaagttcttgggccggacgttaacgagtcgttctataaatttacggtaaacgacaggggt
gcggtacgttttggtatgggcgctattaaaggtgtgggtgcaggtgctgtagataccatt
gtagtgaacagaaaagacgcgacttacaaatcgatatttgaccttgctaaacgtatagac
cttcgtgcagctaataaaaaagcatttgaaaaccttgcgctcgcaggtggtttcgattgc
tttacagcaacgcacagggcgcagtatttccacatggatgccagtgagaatatttctttc
cttgagaaagccgtgcggtatggtaataaattccaggagaacgaaaactcctcgcaggta
agtttattcggcgaagccagtgaggttcagattccggagcctgtagtgccgccatgcgaa
gaatggagtacaatggaaaaactggcgaaagaaaaagaagtggttggtatttatatatcg
gggcatccgcttgacgattataagttcgagatgaaatacttctgtaatgccaggctggaa
gcacttaaaaacctggaccagcacgttaccaagacgcttagttttggaggtattatatct
aacgttatgcacagggttgccaaaaacggcaagggctgggcatcgtttatgctggaaggt
tatgacgagagttacgaatttaggatatacggcgaagaataccttaagttcaggcatttc
cttattggtaataactttacctatatgcgtgtgcttgttaaggaagggtggacgaatgcc
gaaggtaaaaaaggagaaccgaggctgcagtttattgcgatacagtatcttcaggatgta
ttaaccacctttgctaagaaacttattattcagtttaatatagcagagcttcaggagcag
gttatagcaacacttaatgaattattcagggccaataccggagacaataatgtaactttt
gaggtaatggaacttaaaaaagttatcaggcaggttgaagttgctgcttcggctgcgccg
ccaaaagaagcaactgacgaagtagacgagtttgatcaggaagttgtagaacctgtaatg
acagacgttgaagatatacaggtggtaaccaaactggttatgccaagccgcaggttaaag
gtcaagattagcaatgagttactacaggagctggaaaaacttcagttgaactttaaactg
aattaa
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