Flavobacterium psychrophilum Z2: AMR72_13990
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Entry
AMR72_13990 CDS
T04556
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMR72_13990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpsz03019
]
AMR72_13990
03400 DNA repair and recombination proteins [BR:
fpsz03400
]
AMR72_13990
Enzymes [BR:
fpsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMR72_13990
Messenger RNA biogenesis [BR:
fpsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMR72_13990
DNA repair and recombination proteins [BR:
fpsz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMR72_13990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ALM49918
LinkDB
All DBs
Position
3181224..3183419
Genome browser
AA seq
731 aa
AA seq
DB search
MKSTEIDLHKELKKYFGFNKFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALALD
GTAIVVSPLIALMKNQVDAIRSLSSDAGIAHVLNSSLTKTEINQVKKDITSGLTKLLYVA
PESLTKEEYVNFLQSVPISFVAIDEAHCISEWGHDFRPEYRNLRSIIKQLGDVPIIGLTA
TATPKVQEDILKNLDMTDANTFKASFNRPNLYYEIRTKTKNVESDIIRFIRQHKGKSGVI
YCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGKPVAEQE
IGYALLQEVVAYAETSISRRKFLLHYFGEEFDDETGEGADMDDNIRNPKKKVEAQDQVVT
LLEVVRDTKQLYKSKEIIYTLIGKINAVIKAHRTDNQKFFASGAAFDEKHWMALIRQVLV
EGYLSKDIETYGVLKLTEKGEEFIKNPKSFLMSEDHVYNETEEEATVTASKSSATSDEVL
MGMLRELRKKVAKKLGVPPFVVFQDPSLEDMALKYPITLDELGNVHGVGEGKAKKYGKDF
VELIARYVEDNDIMRPDDLVVKSTGANSALKLYIIQNIDRKLSLNDIAKAKGLDMDALLK
EMEQIVYSGTKLNIKYWVDDILDEDQQEEIHDYYMESESDSIKDALKEFDGDFDTEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgaccgaaattgacttacacaaagagttaaaaaaatattttggttttaacaaa
ttcaagggccttcaggaagatgttgtaaagagtattatttcgggccacaacacatttgtt
attatgcctacaggcggtggtaaatcactctgttaccaattgcctgcactggcacttgac
ggaactgcaatcgtagtttcacctcttatcgcgcttatgaaaaaccaggtcgatgctatt
cgcagcctgtcttcagatgccggtatagcacacgttttaaattcatcgcttaccaagaca
gaaatcaatcaggttaaaaaggatattacatcgggcctgactaaattgctatatgttgcg
ccggaatcgcttaccaaggaagaatatgtaaactttttacaaagcgtgcctatttctttt
gttgcgattgacgaagcacactgtatatcggagtgggggcatgacttccgcccggaatac
cgaaatttaagaagtatcataaagcagctgggtgatgtgcctattatcggccttactgca
acagcaacgcctaaggtacaggaagatatactaaaaaatctcgacatgaccgatgccaat
acttttaaggcatcgttcaacaggccaaacctgtattacgagatacgtacaaaaacaaaa
aacgtagaatcggatatcatccgttttatacgccagcataaaggtaaatcgggcgttata
tactgcctgagccgtaaaaaagtagaagagatcgcgcaggtattgcaggttaacggtatt
agtgccgtgccttatcatgccggacttgatgctaaaacacgtgccaaacatcaggatatg
ttccttatggaagatgtggatgttgtagtggcaaccattgcctttggtatgggaattgac
aagccggatgtacgttttgtaattcaccatgatattccaaaatctttagagagttattac
caggaaacaggtcgcgcaggccgtgacggtggcgaaggccattgccttgcgtactactcc
tacaaggatatcgaaaagcttgaaaaattcatgtctggcaagcccgtggcagagcaggag
ataggctatgcgctgcttcaggaagttgtggcatacgccgaaacatccatctcgcgccgt
aaattccttcttcattattttggtgaggaatttgacgatgaaacaggcgaaggtgccgat
atggacgacaatatccgtaaccctaagaaaaaagtggaagcccaggatcaggtggttacc
cttcttgaagtggttagggatacaaagcagctttacaaatctaaagagatcatatatact
cttatcggtaaaataaatgccgtaataaaggcgcacagaacagataatcagaaattcttt
gcttcgggtgctgctttcgatgaaaaacactggatggcgttaatacgccaggtgttggtt
gagggctatctttctaaagatatcgaaacctacggggtgcttaagcttaccgagaaaggc
gaggagtttattaaaaatccgaagtcgttcttaatgagcgaagaccatgtatacaacgaa
accgaagaagaagctacagttacggcttctaaatcgtcggctacttcagacgaggtactt
atggggatgcttcgtgagctacgtaaaaaagttgccaaaaaactgggtgtgccaccgttt
gtggttttccaggatccttcactagaggatatggcacttaaatatccgataacgcttgac
gaactgggcaatgtgcacggcgttggtgaaggcaaggctaagaaatatggtaaagatttc
gtggaacttattgcgcgatacgtagaagataacgatattatgaggccggacgatcttgtg
gtgaagtctacaggggctaactcggcactgaaattatatattatacaaaacattgacaga
aagctttcgctaaatgatattgcaaaagctaaaggcctggatatggatgcgctgcttaaa
gaaatggagcagatagtatattctggcactaagctgaatataaaatactgggttgatgat
attcttgatgaagatcagcaggaagagatccatgactattatatggaatccgaatcggat
agtattaaagatgccctgaaagaatttgacggtgattttgatactgaagagctacgccta
atgaggattaaatttatcagtgaagtagcaaattag
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