Flavobacterium psychrophilum Z2: AMR72_17930
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Entry
AMR72_17930 CDS
T04556
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMR72_17930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpsz03021
]
AMR72_17930
03019 Messenger RNA biogenesis [BR:
fpsz03019
]
AMR72_17930
Transcription machinery [BR:
fpsz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMR72_17930
Messenger RNA biogenesis [BR:
fpsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMR72_17930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
ALM50594
LinkDB
All DBs
Position
4077223..4079121
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AA seq
632 aa
AA seq
DB search
MFDISELKEMKLPELQEIAKKAKINKYRGLKKDELVYQILDHQAANPATIKPLFEEATPA
AATETPAEQPVEKAKRARIAPENQKNDQVIKKAAPVKKESPFTLPLDDTADATPVVTEEP
TPKPEFKKPAPKAEATETTTADAVTPKAVPQPKERIIKEDRKKTIPVKDGATAKPQGADA
KPSDRPKKPQISEEERLAQIERANANNPNHPSYKGNLNKDKDSVPVTPAAAAPATPVAAK
EAAPHQNTQNKKQNYREPDYEFDGIIESEGVLEMMPDGYGFLRSSDYNYLASPDDIYLSN
SQIRLFGLKTGDTVKGVVRPPKEGEKYFPLVKVNKINGHDPQVVRDRVSFEHLTPLFPEE
KFNLADKQSTISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDIANSIAANHPEVYLIV
LLIDERPEEVTDMQRSVRGEVIASTFDEPAERHVKVANIVLEKAKRLVECGHDVVILLDS
ITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIEGGGSLSIIATALTDTGSK
MDEVIFEEFKGTGNMELQLDRKIANKRIFPAIDLTSSSTRRDDLLLDEKTIQRMWIMRKY
LADMNPVEAMDFINERFKKTRNNEEFLISMND
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttccgaattaaaagaaatgaagcttcctgagcttcaggaaattgcaaaa
aaagcaaaaataaacaaatacagagggcttaaaaaagacgaactggtttatcagatcctt
gatcaccaagccgcaaatcctgctactattaaacctctgtttgaagaagcaactcctgct
gcagctaccgaaacaccggccgagcagcctgttgaaaaagcaaaaagagcaaggatagcc
ccagaaaatcaaaaaaatgatcaggttataaaaaaagcggctcctgtaaaaaaggaatca
ccttttacactgccattagatgatactgccgatgctactcctgttgtgacagaagagcct
acgccaaaaccggaatttaaaaaaccggcaccaaaagcagaagcgaccgaaactactacc
gcagatgctgttactcccaaagctgttccgcagcctaaagagagaataattaaggaagac
agaaagaaaactatacctgttaaggatggtgctacggcgaaacctcagggtgctgatgca
aaaccatctgacaggccgaaaaagccacagatttctgaagaagaaagactggcacagatt
gaaagggcaaacgcaaacaatcctaaccatcctagttataagggtaaccttaacaaggat
aaggatagtgtaccggttacacctgctgctgcagctcccgcaactccggttgctgctaaa
gaagctgctccgcatcagaatacacaaaacaaaaaacaaaattaccgcgaacccgattat
gagtttgacggaattatagaaagcgaaggtgttcttgaaatgatgcctgatggatacggt
tttcttcgttcttcagattacaactaccttgcatctcccgatgatatttacctttctaac
tctcagatccgtcttttcggacttaagactggtgatactgtaaaaggtgtggttcgcccg
cctaaagaaggagaaaaatatttcccgcttgttaaagtaaataagatcaacggacacgac
cctcaggttgtgcgtgacagggtttcttttgaacaccttacaccacttttcccggaagaa
aaatttaaccttgccgacaagcaaagtacaatttctacaaggataatcgatttgttctcg
ccaattggtaaaggacaaagaggtatgatcgttgctcagcctaagacgggtaaaacaatg
cttcttaaggatatagctaattcaattgcggctaaccatcctgaagtttaccttatcgta
ttacttattgatgagcgtcctgaagaggttaccgatatgcagcgtagtgttagaggtgaa
gttattgcttctacttttgatgaacctgcagaacgtcacgtaaaggtggctaacatcgta
cttgaaaaagcaaaacgtttagtagaatgtggtcatgatgtagtaatacttcttgactca
attacccgtcttgcaagggcttacaatacagttcaacctgcatctggtaaagtattaagt
ggtggtgttgatgctaatgcattacaaaaaccaaaacgtttctttggtgctgcacgtaac
attgaagggggcggatcgcttagtattattgctactgcacttaccgacaccggctctaaa
atggatgaagttatctttgaagaatttaaaggtacaggtaatatggagcttcagctcgat
agaaaaatcgctaataagcgtatcttccctgctatcgatcttacatcgtcaagtacaagg
agagatgaccttcttcttgatgagaaaacaatacagcgcatgtggataatgagaaaatac
cttgcggatatgaatccggttgaggctatggactttatcaacgaacgctttaagaaaaca
agaaacaatgaagagtttcttatctctatgaacgactaa
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