Fusarium pseudograminearum: FPSE_03857
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Entry
FPSE_03857 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPSE_03857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_03857
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FPSE_03857
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FPSE_03857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
20362475
NCBI-ProteinID:
XP_009255250
UniProt:
K3VMI5
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All DBs
Position
1:complement(9447816..9448872)
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AA seq
331 aa
AA seq
DB search
MPITILSPQPPTPRRPQAVAAANNDSDSDSEGGAGVDADEIFTPGTVITSNSQWMRGHGT
YIPADSSEITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWRVDVAAS
QLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLVVAEVQQLHQDGAASLHTRSLKY
GKLRNGVFAAVTGTGGGGGVVRSKRQVWTMDVANAGGKVDVLLGVNGYIWISKHIESETA
AEAAGINRMEETVSSKVYSSQNDPMDVATMREIARIRSVILALVENGLKVDEDTVTRGYG
EAVDQARDSTDDGLYLGGEKGRRLATAVAGH
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcacaattctcagtcctcagcctcctacacctaggagaccgcaagcagtcgct
gctgcaaacaatgactccgactccgactctgaaggtggcgctggcgtagatgccgatgaa
attttcacaccgggtaccgtaattacatctaactctcaatggatgcgtggacacggcaca
tatattcctgccgactcatctgaaatcacatcgtctcttgctggtactctcacaaagaca
aacaagctcctctcggtgcgccctcttcgcgctcgctacaccccagagatcggtgacctt
gtcgtcggtcgcatcgtcgaagtgcaggccaagcgatggcgcgttgatgtagctgcatcc
cagcttgctatcctccagatctcagccatcaacttgcctggtggaattctccgtaagcgt
accgagaccgatgagctgcagatccgcagcttcttcgccgaaggtgacctagtcgtcgca
gaggttcagcaactgcatcaggacggtgccgcgagtcttcacacccgaagtttgaagtac
ggcaagcttcgaaacggtgtatttgccgctgttactggtaccggtggcggcggcggtgtt
gtccgctccaaaaggcaggtctggacaatggacgttgccaacgccggcggcaaggtggat
gttcttctaggagttaatggttacatctggatcagcaagcacatcgagagcgagacggcc
gctgaggctgctggtatcaaccgcatggaggagactgtcagtagcaaggtctactcaagc
cagaacgaccccatggacgtagcaactatgcgtgagattgcgagaattcgcagtgtcatt
ttggctctggttgagaacgggctgaaggtggacgaggatacagtgaccagagggtacggc
gaagctgtggatcaggcaagagattcgactgacgatggtctgtacctgggaggcgagaag
ggacgacgtctagcaactgctgtggctggtcactga
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