Fusarium pseudograminearum: FPSE_04129
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Entry
FPSE_04129 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPSE_04129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_04129
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FPSE_04129
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FPSE_04129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
PCB_OB
Motif
Other DBs
NCBI-GeneID:
20362747
NCBI-ProteinID:
XP_009255522
UniProt:
K3VPA9
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All DBs
Position
4:complement(<3255124..>3255802)
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AA seq
208 aa
AA seq
DB search
MAVDDIPSVALPGKVLGPVTKFAPGAGTHVYEGNVVSSLLGQVTVTPAAKGPGPQKRLNK
ITAPTSDELAAISVSRHGRKREILPDVDNIVLARVLRLMPKQAIVVIQQVGDTVLQTEWQ
GLIRVQDVRATEKDKVKIYESFKPGDIVRAQVISLGDQANYYLSTASNELGVILATSEAG
NDMVPISWKEYKDPETGISEPRKVAKPS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgacgacatcccctccgttgccttgccaggcaaggttttgggcccggttacc
aagtttgcgcccggcgccggtacacacgtttacgaaggaaatgtagtatcttctctactc
ggccaagttaccgtgacgcctgcggccaagggtccaggacctcaaaagcgcctaaacaag
atcaccgcaccgacgtcagacgagctcgccgccatctccgtatcccgccatggtcgcaag
cgcgagattctccccgatgtcgataacatcgtacttgcgcgcgtgctccgtctcatgccc
aagcaggctattgtggtgatccagcaagtgggcgacactgttctccaaaccgagtggcag
ggcttgattcgagtgcaggatgtgagggcaacagagaaggacaaggtcaagatttacgaa
tccttcaagcctggtgatattgtgcgagcgcaagtgatctcccttggtgaccaggccaac
tattacctctcaacggcatccaacgaactgggtgttattttggcgacgagcgaggcgggt
aatgacatggttcccatcagctggaaagaatacaaagaccccgaaacaggcatcagtgag
cctcgaaaagtcgcaaagcctagctga
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