Fusarium pseudograminearum: FPSE_07170
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Entry
FPSE_07170 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03018
RNA degradation
fpu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FPSE_07170
09123 Folding, sorting and degradation
03018 RNA degradation
FPSE_07170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_07170
03041 Spliceosome [BR:
fpu03041
]
FPSE_07170
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FPSE_07170
mRNA degradation factors
5'-3' decay
Lsm complex
FPSE_07170
Spliceosome [BR:
fpu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FPSE_07170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
20365788
NCBI-ProteinID:
XP_009258563
UniProt:
K3VHK4
LinkDB
All DBs
Position
3:<1854679..>1855292
Genome browser
AA seq
139 aa
AA seq
DB search
MVRSHIDLSTELKRYLLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQ
TSPEGDRFVRLPEVYVKGNNIKYLRVPDEIIDQVSESQKGQQGGFRGGRGGGSRGDHSGR
GGDRGRGRGGRGRGRGRGQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atggtacgttcacatattgatcttagcaccgagctgaagagatatttgctacccctcggt
ctacttaacgccgcccaaggccaccccatgctggtcgagctgaagaacggagagacactc
aacggtcacctggtttcttgcgatacatggatgaacctcacactcaaggaggtggtgcag
acaagtccggagggcgatagattcgtgcgattaccggaggtctatgtcaagggaaacaac
atcaaatacctgagagtacccgacgagattatcgaccaggttagcgaatcgcagaagggc
cagcagggcggtttccgaggcggacgaggaggcggttcaaggggagaccacagtggacgc
ggcggtgaccgtggtcgtggccgtggaggccgaggccgaggccggggacgaggtcaataa
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integrated database retrieval system