Fusarium pseudograminearum: FPSE_11504
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Entry
FPSE_11504 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPSE_11504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_11504
03041 Spliceosome [BR:
fpu03041
]
FPSE_11504
03009 Ribosome biogenesis [BR:
fpu03009
]
FPSE_11504
03016 Transfer RNA biogenesis [BR:
fpu03016
]
FPSE_11504
Enzymes [BR:
fpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FPSE_11504
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FPSE_11504
Spliceosome [BR:
fpu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FPSE_11504
Complex C
U4/U6.U5 tri-SnRNP related factors
FPSE_11504
Ribosome biogenesis [BR:
fpu03009
]
Eukaryotic type
Pre-60S particles
Helicases
FPSE_11504
Transfer RNA biogenesis [BR:
fpu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FPSE_11504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATPase_2
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
20370121
NCBI-ProteinID:
XP_009262896
UniProt:
K3UAX0
LinkDB
All DBs
Position
1:5414242..5417575
Genome browser
AA seq
1094 aa
AA seq
DB search
MDELFDVFEGNVEAPSASEDESRQNRKGDKTKKRKANAINGKHGDAEKSEDVDMDNNSTE
ESKDEASSDDESSEESASQQDTKRRKKEDGVGPVMTDTFQTAESREVAGAATFTEQDSSL
VLSHNIQHQVALPPDLDYEYVPLSEHKAPEQPARTWNFKLDPFQSLSVASIEREESILVS
AHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGDVTINP
TASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYV
FLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFNE
QNFNKVMQEVEEKKGADPNDPNARQKGKGKNKKTNKGGADNGSDIAKIIRMTIKKKFNPV
IVFNFSKRECENMAMNISSLSFNDDSEKAMVRKVFHNAIESLSEQDRELPQIINLLPLLE
RGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKR
RPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNM
ILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKELMSLQQERDSTTIADESTVKDYYQI
RQQLSAYTRDMRTVIQHPNYSISYLQPGRLVQIYNPKDENESIAGNGTDFGWGVIVNQTP
RRAPKLNEPEYIPQEAHVIDVLLPISRSSADFHPGHPAEEMPPGIKPCNDDDDFKFAVVP
CLLTCIKAISQIRLFLPKEGLKSDSDKDTLTKSLMEVKRRFPDGLPVLDPIENMEITDDS
FKKLLRKIEVLESRLLANPLHLSPLLPSLWDQYHAKVKLTDKVKETKKSIAKAYSIAQMD
ELKSRKRVLRRLGFINDAEVVQLKARVACEVSSTEGHELLLSELLFDRFFNELTPEMCAA
VMSCFIFDEKVEAPALKEELQKPYREIQAKARIIAKVSQECKLDVNEEEYAQKLKWQLME
TVYTWAQGRPFVEICKMTNVYEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEESLS
KIRRDIVAAQSLYL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattgtttgatgttttcgagggcaacgtggaggccccgagtgctagcgaggac
gagtcgcgacagaaccgcaagggcgacaagacaaagaagagaaaggccaacgcgataaac
ggcaagcacggcgacgcggaaaagtctgaggatgtcgacatggacaacaacagcaccgag
gaatcaaaggatgaggcatcatccgacgacgagtcttccgaggaaagtgccagccagcag
gacaccaagaggaggaagaaggaggatggtgtaggccctgttatgacagatacgttccag
acggccgagtcaagagaggtcgctggcgcagccacctttacagagcaggattcatctctc
gttttgtcgcacaacattcaacatcaggttgctctacccccggatctagactacgaatac
gtccctctttccgagcacaaggcccccgagcagcccgcgcgaacatggaacttcaagctc
gatcctttccagagtctctccgtagcgtctattgaacgcgaggagagtattcttgtctcc
gcgcatacttctgccggaaaaaccgtcgtcgccgagtacgccatcgcgcaatgtttgaag
cgcaaccagagagtcatctacacaagtcctatcaaggccttgagtaaccaaaagtaccga
gatttcgaagccatttttggagatgttggtctcatgactggagatgttactattaacccc
acagcaagttgcttggtcatgactactgaaattttgcgatctatgttgtatcgaggttcc
gagatcatgcgagaagtcgcctgggtcgtgttcgacgagattcattatatgcgagacaag
acgagaggtgtcgtctgggaggagaccatcatcatgcttcccgacaaggtccgatacgtc
ttcctttctgccaccattcccaacgctttccagttcgccgagtggattgccaagatccat
caccaggcctgtcacgtcgtgtacaccgatttccgaccaactccccttcagaactacttc
ttccctgccggtggcagtggagctagacttatcgtcgacgagaagagcaactttaacgag
caaaacttcaacaaggttatgcaggaggtcgaggagaagaagggcgctgaccccaacgac
cccaacgcgcgacagaaaggaaagggcaagaacaagaagactaacaagggtggcgctgac
aatggctcggatattgccaagatcattcgaatgaccatcaagaagaagttcaaccccgtt
attgtcttcaacttcagcaagcgagagtgcgagaacatggccatgaacatttcgtcactg
agcttcaacgacgattctgaaaaggccatggttcgcaaggttttccacaacgctatagag
agcttgtcagagcaggacagggagcttcctcagattatcaacttgctgcctctgttggag
cgcggtattggtgtccatcactctggtcttctgcccattctcaaggagaccattgagatt
ctgttccaggagtctttgatcaaggttctcttcgccaccgagaccttctccatcggtctc
aacatgcctgccaagactgttgttttcacacaagtcaccaagtgggacggtgtcaagagg
cgtcctcttacttcatccgagtacattcagatggccggtcgtgctggacgtcgtggtctc
gatgcccgtggtattgtcatcatgatgattgacgacaagcttgagcccgatacagccaag
gagattgttaccggacaccaagatcgactcaactctgctttctacctcggctacaacatg
attctgaaccttctccgtatcgaagctatctcgcccgagttcatgttggagcgatgtttc
catcagttccagaacgccgctagcgtcccgtccctggagaaggagttgatgtctttgcag
caggagcgcgacagcaccaccattgccgacgagtccaccgtcaaggattactaccagatt
cgacagcagctcagtgcttacacgagggatatgcgaaccgttattcagcaccccaactac
agtatctcgtaccttcagcctggccgcttggtacagatctacaaccccaaggacgagaac
gagtctattgccggcaacggaaccgactttggctggggtgttattgtcaaccagaccccc
cgtcgtgcccctaagctgaacgagcccgaatatatccctcaggaagctcatgtcattgat
gttctccttcctatttccaggtcaagcgcggatttccacccgggacaccctgctgaggag
atgcctcccggtatcaagccttgcaacgatgacgatgacttcaagttcgcagttgttcct
tgtctgttgacctgcatcaaggcgatcagccagattcgactcttcctgcccaaggaaggc
ctgaagagcgactctgacaaggatacgctcaccaagtccctcatggaggtcaagcgtcgt
ttccctgatggtctccctgtcctggatcctattgagaacatggaaattaccgatgactct
ttcaagaagcttctgcgaaagattgaggttcttgagtctcgacttttggccaaccctctc
cacctttcccctcttctcccttcgctttgggatcagtaccacgccaaggtcaagctcaca
gacaaggtcaaggagacaaagaagtccatcgccaaggcatacagcattgctcagatggac
gagctcaagtcgcgcaagcgtgtcctgcgtcgtctaggcttcatcaacgacgccgaggtc
gttcaactcaaggcccgtgttgcttgtgaggtttcttccaccgagggtcacgagcttctc
ctttccgagttgctctttgaccgattcttcaacgagcttacccccgagatgtgcgctgcc
gtcatgagttgctttatctttgatgagaaggtcgaggcccctgctctcaaggaggagctc
cagaagccctaccgcgagatccaggccaaggcccgcatcattgccaaggtcagccaggag
tgcaagctcgatgtcaatgaggaggaatacgcgcaaaagctcaagtggcagcttatggag
acggtttacacatgggcccaaggtcgtccatttgtcgagatttgcaaaatgacaaatgtc
tacgaaggctcacttatccgtcttttccgtcgtctggaagagcttcttcgacagatggcc
caggctgccaaggtcatgggcaacgaggatctgaccaagaagtttgaggagagtctgtcc
aagatccgcagagatatcgttgccgcccagagtctgtacctataa
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