Fusarium pseudograminearum: FPSE_12116
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Entry
FPSE_12116 CDS
T03456
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fpu
Fusarium pseudograminearum
Pathway
fpu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fpu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FPSE_12116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpu03021
]
FPSE_12116
03019 Messenger RNA biogenesis [BR:
fpu03019
]
FPSE_12116
Transcription machinery [BR:
fpu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FPSE_12116
Messenger RNA biogenesis [BR:
fpu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
FPSE_12116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
VHS
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
20370733
NCBI-ProteinID:
XP_009263508
UniProt:
K3VWR4
LinkDB
All DBs
Position
2:7844180..7846095
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AA seq
596 aa
AA seq
DB search
MSGDSAEVAEDYRLALEDLSSNLRFEISNLTVIARENTEHALAIAEVLQQHILKAAPSKK
LPALYVLDSIVKNVGTPYTLYFGRNLFKTFMESYAVVDQPVRRKMEEMLRTWKEPVPGSM
DSRPVFSHELVRPIENALLKARAATMPQAGMMPGRPRSAVPHRDTPTPPGMRFPPGHPAQ
QYTSNGGQSLSNDIRNLIVTTQAEASRNPHDHGVQTRLRALHDLQVVVNSTSLPPDQLEL
IKNKVTELAAVNMMAPLTQRPAPTPPVPVQARPIPMPPVSVALPQPAAPAPAQEGVTLDA
LLGKGALAALMARQSATPQNSTPTPQPTPVQHEPPKPPMPTMSALEAMMSMPPMSATPTI
PAASTPVPPPASAAPWSLLDQLRKSGLLPPAPASTPALVQQGGINLAALKQPCQPSLIRQ
LHNDLGQPCTQCGRRFRDDEAGKKKKIAHMDWHFRVHQRTNEAEKRGMHRSWYVDQGEWL
KSREVVDVDHVPTAEDVAAQASKASEAAKPKYIPVPDPSRGINPVCPICQDRFENKWLDT
AQEWVWLDTVLVGNRAYHASCHAEATRDRENTPVLGKRKAETSIASPKVRSLKTSA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagactctgctgaggtggcggaggactatcgcctcgcgctggaagacctctcc
tctaatttgcgcttcgagattagcaacctgactgtcattgctcgcgagaatacagaacac
gctctagcgatcgcggaagttttgcagcaacacatcctcaaggcagctccaagcaagaag
ctcccagctctgtacgtactagactcgatcgtcaaaaatgttggcactccatacactctc
tacttcggtcgcaatcttttcaaaacctttatggaatcatacgctgtagtcgatcaacct
gtgcgtcggaaaatggaagagatgcttagaacatggaaggagcctgttcctgggtctatg
gacagcagacctgtgttttctcacgagttggtgcgacctattgagaatgcacttttgaag
gcacgcgccgctaccatgccccaagcgggaatgatgcctgggcgaccgcgatctgctgtg
ccccatcgtgataccccgacaccgcctggaatgagatttccaccaggccacccagctcaa
caatacacatcaaatggaggacagtcattgagcaatgacattcggaatctaattgttacc
acgcaggcggaagcctcaaggaacccacatgatcatggtgttcagactagattaagagca
ctccatgacctgcaggtcgttgtgaacagcactagcttgcccccggatcagcttgagctc
attaagaacaaagtaactgaacttgctgccgtaaacatgatggcgcctctgactcaaagg
cctgcgcctactcctcccgtgcctgtccaagcacgccctatcccaatgcctccagtgtcc
gtagctctccctcagcctgcagccccggctccggcgcaagaaggtgtgacgcttgacgcg
ctcttgggcaagggagcgttggcagcactgatggcaaggcagtcggccactcctcaaaac
tcgacacctactccgcagccaacccccgttcaacatgaaccaccaaaaccaccaatgcct
acgatgtctgcgttggaagccatgatgtctatgccaccaatgtcagcaacaccgaccata
ccagcagcatctacaccagtcccaccgccagcatcagcagccccatggagtctgcttgat
caactacgaaagtcgggtttactcccacctgcacctgcgtctacgcctgcactagttcaa
caaggcggcatcaacctggctgctttaaagcaaccgtgccaaccttctttgatccgtcaa
ctacataacgacttgggccagccatgcactcagtgcggtagacgatttcgagatgatgag
gctggcaagaagaagaagatcgcccatatggactggcatttccgtgtacatcaacgaacc
aacgaagctgagaaacgaggcatgcaccggagttggtacgttgaccaaggcgaatggcta
aagtcaagagaggtggtcgacgtggaccacgtcccaaccgctgaggatgttgccgcgcag
gcctctaaagcatctgaggctgccaagccaaagtacattcccgtccctgatccatctcgt
ggcatcaaccccgtttgtccgatttgccaagatcgattcgagaacaaatggctcgacact
gcacaggaatgggtatggctagatacagttctggtcggcaatcgagcatatcatgcttca
tgtcacgcagaagcaacccgagatcgcgagaacacgccagtgttaggcaaaagaaaagcc
gaaacaagcattgcgtcaccaaaagttcgatctctcaagacatcagcttaa
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