Franconibacter pulveris: ACBV55_07935
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Entry
ACBV55_07935 CDS
T10797
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fpul Franconibacter pulveris
Pathway
fpul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACBV55_07935 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpul03019
]
ACBV55_07935 (rne)
03009 Ribosome biogenesis [BR:
fpul03009
]
ACBV55_07935 (rne)
Enzymes [BR:
fpul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACBV55_07935 (rne)
Messenger RNA biogenesis [BR:
fpul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACBV55_07935 (rne)
Ribosome biogenesis [BR:
fpul03009
]
Prokaryotic type
rRNA processing factors
ACBV55_07935 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
XES85772
LinkDB
All DBs
Position
complement(1689786..1692962)
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPSDEEYAERKRPEQPALATFVMPDVPPM
PQESAAAEKPVAPGVAVAQPPAQPAQPGFMSRLIGAFKNLFTGETASETPVQPQEQKAPA
QEKPQERRNNRRQGPRRDRNERPNRETRAENGEVREAAREENRRNRRQAQQQNAEAREAR
QPVVEETEKAKPREEQQPRRERNRRRAEEKRQAQQEVKALTREEAPEQEAAEQEERVQVM
PRRKPRQLTQKIRIESAESAPVVEEAVEAAPSASTEVATIPLPAVVENAAEQEEAGEGRA
DNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPVA
RPQDEVMEEQFEQAAPDVVETPADVAAPAAAAQPAPTSEPVVVEPVADAQAEAPQEPAIE
TSHPEVIESPVDAQPQLIEPREEAVAERVIEEAQPASEAEHVREAQAAEMAETAPVAEPQ
AEPQAEPQAEVQPREAKPQEQAKPVEAAPVAAKPSVAVERNHAAAPMTRAPAPEYIPEPP
RHSDWVRPAFDFSGKGAAGGHSATHHASAPAGRPQAAE
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcaggaagagttgcgtgtcgcccttgttgat
gggcaacgcctgtacgacctggatatcgaaagcccaggacacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacccagtctggaagccgcatttgttgattac
ggcgctgaaagacacggtttcctcccgttaaaagaaatcgcccgcgaatatttccccgcc
aactactccgcccatggccgccctaacatcaaagatgtactgcgtgaaggtcaggaagtt
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcgctgaccacctttatc
agcctggcgggaagttatctggtgctgatgccgaacaacccgcgcgcgggcggtatttca
cgccggattgaaggcgacgatcgcaccgagctgaaagaagcgctctcaagccttgaactg
cctgacggcatgggtcttatcgtgcgcaccgcaggcgtcggtaaatccgccgaagcgctg
cagtgggatttaagcttccgcctgaagcactgggaagcgattcagaaagccgcggagagc
cgcccggcgcctttccttatccatcaggaaagcaacgttatcgttcgcgctttccgcgac
tacctgcgccaggacatcggcgaaatccttatcgacaacccgaaagtgcttgagcttgcg
cgccaacatatcgccgcgctgggtcgtccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgttcagccattaccagattgagtcgcagattgagtccgccttccag
cgcgaagtgcgtctgccttccggcggttcgatcgttatcgacaccaccgaagcgctgacc
gccatcgatatcaactccgcccgcgccacccgcggcggcgatatcgaagagaccgcgttt
aacaccaaccttgaagcggcggatgagattgcgcgccagctgcgcctgcgcgacctcggc
ggccttatcgttatcgactttatcgatatgaccccggtgcgccatcagcgcgcggtggaa
aatcgcctgcgtgaagcggtgcgccaggaccgtgcgcgcatccagattagccacatctcg
cgcttcggcctgctggagatgtcccgtcagcgcctgagcccgtcgcttggcgaatccagc
catcacgtttgcccgcgctgtagcggcaccggcaccattcgcgacaatgaatcactctcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggtgcat
gccattgtgcctgtgcctatcgcctcttacctgctgaacgaaaaacgcgaagcggtaaac
gcgattgaaaaacgccagggcggcgtacgctgcgtgattgtgcctaacgatcagatggaa
actccgcactactctgttttgcgcgtacgtaaaggcgaagagacgcccaccctgagctat
ctgctgccgaagctgcatgaagaagccatggcgttgccttctgatgaagagtacgccgag
cgtaaacgtcctgaacagccagcgcttgctacctttgtgatgccggatgtgccgccgatg
ccacaggaaagcgccgctgccgagaaacctgtcgcgccgggcgtcgccgtagcccagccg
ccggcgcaacccgcgcagcctggttttatgagccgtctgattggcgcgtttaaaaatctg
ttcaccggtgagaccgccagcgaaacgcctgttcagccgcaagagcagaaagcgcctgcg
caggagaaaccgcaggagcgtcgcaacaaccgccgtcagggaccgcgtcgcgatcgcaac
gagcgccccaaccgtgaaacccgcgctgaaaatggcgaagtgcgtgaagcggctcgcgaa
gagaaccgccgcaaccgccgtcaggctcagcaacagaatgccgaagcgcgtgaagcccga
cagccggttgtggaagagacggagaaagccaaaccgcgtgaggagcagcagccgcgtcgc
gaacgtaaccgtcgccgtgcggaagagaaacgtcaggcgcagcaggaagtgaaagcgctg
acccgcgaagaagcgccggagcaggaagccgccgagcaggaagagcgcgtacaggtgatg
ccgcgtcgtaaaccgcgccagcttacgcagaagatccgcattgagtccgccgaatccgcg
ccggttgttgaagaagcggttgaagcggcaccgtccgccagcaccgaagtcgccaccatt
cctctgccagcggtcgtagaaaacgcagctgagcaggaagaagcgggcgaaggccgtgca
gataacgccggtatgccgcgtcgctcccgtcgttctccgcgccatctgcgcgtgagcggc
cagcgccgtcgccgttatcgtgacgagcgttacccgacgcagtcgccaatgccgctgacc
gtcgcctgcgcctcgccagaaatggcctccggcaaagtctggatccgctatccagtcgct
cgtccgcaggatgaagtgatggaggagcagttcgaacaggctgcgccggacgttgttgag
accccggctgacgtcgctgcccctgccgccgccgcacagccagcgccgacgagcgagccg
gtggtggttgaaccggttgccgacgcgcaagccgaggcgccgcaggaacctgcaattgaa
acgtctcacccggaagttatcgaaagcccggttgatgcgcaaccgcagcttatcgagccg
cgggaagaagccgttgcagagcgcgtgattgaagaagcgcagccggcaagcgaagcagaa
cacgttcgcgaagcccaggcggcggaaatggcggaaaccgcgccagtcgccgagccgcag
gcggagccgcaggcggagccgcaagcagaggtgcagccgcgcgaagcgaagccgcaagag
caggcgaagccggttgaagcagcgcctgtcgcggcgaaaccgagcgtagcggttgaacgc
aaccacgccgctgcgccgatgactcgcgctccggcgccggaatacatcccggagccgccg
cgtcatagcgactgggttcgcccggccttcgacttcagcggcaaaggcgctgcgggcggc
catagcgccacccatcacgcctctgcgccagcgggtcgtccgcaggcagcagaataa
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