Franconibacter pulveris: ACBV55_20060
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Entry
ACBV55_20060 CDS
T10797
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fpul Franconibacter pulveris
Pathway
fpul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACBV55_20060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpul03019
]
ACBV55_20060
03009 Ribosome biogenesis [BR:
fpul03009
]
ACBV55_20060
Enzymes [BR:
fpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACBV55_20060
Messenger RNA biogenesis [BR:
fpul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACBV55_20060
Ribosome biogenesis [BR:
fpul03009
]
Prokaryotic type
rRNA helicases
ACBV55_20060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XES83806
LinkDB
All DBs
Position
complement(4218722..4220641)
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AA seq
639 aa
AA seq
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MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVSEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRGLLAQIQPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRPKREFRERDDRFERRGERGERGERSDRPKRERR
DAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPTEV
LQHFTRTRILNKPMNMQLMGDAQPRGERRPGGRSFGGEGREGGRGEGRRFGGERREGGNS
RFAGERREGGRFSGERREGSRGPRREEGATTGRRRFGDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatccccgatccaggcagaatgtattccgcatctg
ctttctggtcgtgacgtcctgggcatggcccagaccggtagcggcaaaaccgcagcgttc
tcgctgccgctgcttaacaacattgatccggaactgcgcgcgccgcagatcctcgtactg
gctccgacccgtgaactggctgttcaggttgcggaagctatgactgaattctctaaacac
atgcgtggcgtaaacgtcctggccctctatggcggtcagcgttacgacgtgcagctgcgc
gccctgcgtcagggaccgcagattgttgtcggtaccccggggcgtctgcttgaccacctc
aaacgcggtaccctggacctctctcgcctgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggctgagatcccggaaggt
catcagaccgccctgttctctgccaccatgccggaagctatccgtcgcattacccgtcgc
ttcatgaaagagccgcaggaagtgcgcattcagtccagcgtcaccacgcgcccggacatc
agccagagctactggtctgtttacggcatgcgtaaaaacgaagcgctggtgcgtttcctc
gaagcggaagattttgatgcggcgattatcttcgtgcgcactaaaaacgcgacgctggaa
gtttccgaagcgctggagcgcagcggttacaacagcgcggcgctgaacggcgacatgaac
caggcgctgcgcgagcagacgctggagcgcctgaaggatggccgtctcgatattctgatc
gcaaccgacgtggctgctcgcggtctggatgttgagcgcatcagccttgttgtgaactac
gatattccgatggattcggaatcttacgttcaccgtatcggccgtaccggtcgtgctggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gagcgcaccatgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggc
aaacgtcgtctggaaaaattcgccgctaaagttcagcagcagctggaaagcagcgatctg
gaccagtaccgtggcctgctggcgcaaattcagccaagcgctgaaggtgaagagctggac
atcgaaacgctggccgctgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctg
ccgccggatgcgccgatgcgtcctaagcgtgaattccgcgagcgtgacgatcgtttcgag
cgccgtggcgaacgcggtgagcgtggcgaacgtagcgaccgtccgaaacgcgagcgtcgc
gatgctggcgaaatggaactctaccgcattgaagtgggtcgcgatgatggcgttgaagtt
cgtcatattgttggcgctatcgctaacgaaggcgacatcagcagccgttacatcggtaac
atcaagctgtttgcttcgcactccactatcgagctgccgaaaggcatgccgactgaggtt
ctgcagcacttcacccgcacgcgtattctcaacaagccgatgaatatgcagctgatgggc
gatgcgcaaccgcgcggcgaacgtcgtccgggcggtcgcagctttggcggcgaaggtcgt
gaaggcggccgcggtgaaggccgtcgctttggcggcgaacgtcgcgaaggcggcaatagc
cgttttgccggtgaacgtcgcgaaggcggccgtttcagcggtgagcgtcgcgaaggcagc
cgcggtccgcgtcgtgaagagggcgccaccacaggtcgccgtcgtttcggcgacgcataa
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