Flavobacterium psychrophilum V3-5: IA03_03595
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Entry
IA03_03595 CDS
T03659
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fpv
Flavobacterium psychrophilum V3-5
Pathway
fpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IA03_03595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpv03021
]
IA03_03595
03019 Messenger RNA biogenesis [BR:
fpv03019
]
IA03_03595
Transcription machinery [BR:
fpv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IA03_03595
Messenger RNA biogenesis [BR:
fpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IA03_03595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
NACHT
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AIG29611
UniProt:
A0A075S6P4
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All DBs
Position
787379..789130
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AA seq
583 aa
AA seq
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MFDISVLKEMKLPELQEIAKVAKIAKFKTLKKDELVYQILDYQAANPEKIAPIATETISV
IDEKPKRARVVEAKEAKPIVSKKVIAKPPVQQEVITFEEPKAQTTPELEKPVVEAIQKQR
APKVIRFTKDENNVTKVDNSHRNKKIVKPVIVPANTEEGVSEILENPETVQKEKSSNPNQ
NQKKPQERKRADEVNQNPNAKNKNNFREPDYEFEGIIESEGVLEMMPDGYGFLRSSDYNY
LASPDDIYLSTSQVRLFGLKTGDTVKGVVRPPKEGEKYFPLVRVLKINGHDPQVVRDRVS
FEHLTPIFPTEKFRLAEKGSSISTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKEIANAI
AANHPEVYLIVLLIDERPEEVTDMQRSVRGEVVASTFDREPQEHVKIANIVLEKAKRLVE
CGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNVENGGSLSI
IATALTETGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEK
TIQRMWIMRKYLADMNPVEAMEFINDRFKKTRNNEEFLISMND
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttctgttttaaaagaaatgaagctccctgagctacaagaaattgcaaaa
gttgctaaaattgcaaaattcaagacgttaaaaaaagacgaacttgtttaccaaatatta
gattaccaagctgcaaaccccgaaaaaattgctccaattgcaaccgaaactatttctgta
atagatgaaaagccaaaaagagctagggttgtagaggctaaagaagcaaaaccaattgtt
tcaaaaaaggtaattgcaaagccaccagttcagcaagaagtaattacttttgaagagcct
aaagcccaaacaactccagaattagaaaaaccagttgttgaagccatacaaaagcaacgt
gcgccaaaagtaattcgatttacaaaagacgaaaataatgtgactaaggttgataattca
catcgaaataaaaaaatagtaaaacctgtaattgtccctgcaaatacagaagaaggagtt
tctgaaattttagaaaatccagaaacggttcaaaaagaaaagtcttcaaatccgaatcaa
aatcagaaaaagccacaagagcgaaagcgagctgacgaagtaaaccaaaatccaaatgca
aaaaacaaaaataattttagagagccagattatgagttcgaaggaattatagaaagcgaa
ggtgtactagaaatgatgccagacggttatggttttttgcgttcttcagattataattat
ttagcctcaccagatgatatttatttatcgacctcgcaagttcgattatttggtttaaaa
acaggagatactgtaaaaggcgtagttcgtccgccaaaagaaggcgaaaaatatttccct
ttagtaagagtactaaaaataaacggacatgatccgcaagtggttagagacagagtttct
ttcgagcacttgaccccaatattcccaacagaaaaatttcgcttggccgaaaaaggaagt
tcaatttctactcgtattatcgatttgttttctccaataggaaaaggacaacgtggtatg
atagtcgcacagccaaaaacaggtaaaacgatgttgcttaaagagattgctaatgctatt
gcagccaatcatccagaagtatatttaattgttttattaatagacgaacgcccagaagaa
gttacagatatgcaacgtagtgtgcgtggcgaagtagtagcttctacctttgatagagag
ccgcaagaacacgtaaaaattgccaatattgtgctagaaaaagcaaaacgtttggtcgaa
tgtggtcatgatgtagtcatactattagattcgattacacgtttggcaagagcttataat
actgtgcaaccagcttctggaaaagtattaagtggtggtgtagatgccaatgcgttgcaa
aaaccaaaacgttttttcggagcagctcgtaatgtagaaaacggtggctcgttaagtatt
attgcaacagcacttacagaaacgggttctaaaatggacgaagttattttcgaagaattt
aaaggaactggtaatatggaattgcaattggatcgtaaaattgcaaaccgtcgtattttt
ccagcaatagatttaacatcatctagtacacgtcgtgatgatttattactcgacgaaaaa
acaatacaacgcatgtggattatgcgtaaataccttgcagatatgaatcctgtagaagct
atggaatttataaatgaccgatttaagaaaacaagaaataacgaagaatttttaatttcg
atgaatgattag
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